View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17158_low_3 (Length: 836)
Name: NF17158_low_3
Description: NF17158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17158_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 17 - 475
Target Start/End: Complemental strand, 14772014 - 14771572
Alignment:
| Q |
17 |
aaatctattatggtaactgaatccattatacacctgtattgcagttggagttgccgtgacgattgggatggttctgcgactgcaaggaagaatgcgtcaa |
116 |
Q |
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| T |
14772014 |
aaatctattatggtaacttaatccattatacacctgtattgcagttggagttgccatgacgattgggatggttctgcgactgcaaggaagaatgcgtcaa |
14771915 |
T |
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| Q |
117 |
ggaagaataacaaagaaacagacaataacatcactcaaaaattcaaaatctaaacagtgcaaaagcatctacccagaaagaatggatgcagaaagaatgg |
216 |
Q |
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| T |
14771914 |
ggaagaataacaaagaaacagacaataacatcactcaaaaattcaaaatctaaacagtgcaaaagtatctacccagaaagaatggat------------- |
14771828 |
T |
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| Q |
217 |
atgcagcctgcttttggctaagctacattctcttttaacaataaaggcnnnnnnnnacgccatctattctagagtttagcacaaatccccatagcagtat |
316 |
Q |
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| T |
14771827 |
--gcagcctgcttttggctaagctacattctcttttaacaataaaggc-tttttttacgccatctattctagagtttagcacaaacccccatagcagtat |
14771731 |
T |
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| Q |
317 |
cgtgaaaaattggattggattgctgccgattctcattatagaggaaaaaataattaagaattatgttgtgattgatgattgagattggtgagnnnnnnnn |
416 |
Q |
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| T |
14771730 |
cgtgaaaaattggattggattgctgccgattctcattatagaggaaaaaataattaagaattatgttgtgattgatgattgagattggcgaggaaaaaaa |
14771631 |
T |
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| Q |
417 |
cgcatgccttcgttcttgacagtaaaccatttaacacttgtgtcaacgaatcctgactt |
475 |
Q |
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| T |
14771630 |
cacatgccttcgttcttggcagtaaaccgtttaacacttgtgtcaacgaatcctgactt |
14771572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 570 - 822
Target Start/End: Complemental strand, 14771474 - 14771218
Alignment:
| Q |
570 |
attataatcataaacggtcttgctctcataaaaaagaacaactataaaattcacataatgaacaaataaaactgtgactccagtcaacaatattaattct |
669 |
Q |
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| T |
14771474 |
attataatcataaactgtcttgctctcataaaaaagaacaactataaaattcagataatgagcaaataaaactgtgactccagtcaacaatattaattct |
14771375 |
T |
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| Q |
670 |
tctttgtagcttttctttgatcctttctttgtgaagtagttgaaatatcttact-----tgcaatttcaacacaattgagttattagtttagtgcgtcta |
764 |
Q |
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| T |
14771374 |
tctttgtagcttttctttgaacctttctttgtgaagtagttgaaatatcttacttgacctgcaatttcaacacaattgagttattagtttagtgcgtctt |
14771275 |
T |
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| Q |
765 |
tttctctccaattaatgaatgaaacagcaacnnnnnnncaagtatcatctagcctatg |
822 |
Q |
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| T |
14771274 |
tttctctacaattaatgaatgaaacagcaac-aaaaaacaagtatcatctagcctatg |
14771218 |
T |
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