View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17158_low_31 (Length: 337)
Name: NF17158_low_31
Description: NF17158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17158_low_31 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 8925861 - 8925533
Alignment:
| Q |
1 |
attaatagactaatatagtaatacaaaacataaaacaaatgcaaatgaattgacttagtataaaataaaataattcttacatatattttatgcctataaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
8925861 |
attaatagactaatatagtaatacaaaacataaaacaaatgcaaatgaattgatttagtataaaataaaataattcttacatatatttgatgcctataaa |
8925762 |
T |
|
| Q |
101 |
tgactggatttagttttgcttatattaatttattttatgtgatttttatcatttcaaaatataaaattgttgttgttcat--aaacaattataaagaaac |
198 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
8925761 |
tgactggattttgttttgcttatattaatttattttatgtgatttttatcatttcaaaatataaaattgttgttgtccataaaaacaattataaagaaac |
8925662 |
T |
|
| Q |
199 |
aaataatgttttttattataaaatatatcatgcaattcattaatcatattaaatattttttccacctatgtagtccaacttaactaaagagataagtctt |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
8925661 |
aaataatgttttttattataaaatatatcatgcaatacattaatcatattaaatattttttccacctatgtagtccgacttaactaaagagataagtctt |
8925562 |
T |
|
| Q |
299 |
tgtaattgtccgcatgtcatccagttcat |
327 |
Q |
| |
|
|||| |||||||||||||||||||||||| |
|
|
| T |
8925561 |
tgtagttgtccgcatgtcatccagttcat |
8925533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University