View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17158_low_33 (Length: 324)
Name: NF17158_low_33
Description: NF17158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17158_low_33 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 11 - 324
Target Start/End: Original strand, 54266362 - 54266676
Alignment:
| Q |
11 |
cagagaataaa-ctgattaagcttacaaataaaaaggcatataaaacagattcagaaacttattgacagctacatcacagaattttgaagagaagacaag |
109 |
Q |
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| T |
54266362 |
cagagaataaaactgattaagcttacaaataaaaaggcatataaaacagattcagaaacttattgacagctacatcacagaattttgaagagaagacaag |
54266461 |
T |
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| Q |
110 |
agagaaagaatttaacatagagccgattttacagacggccacaaacaaccatctttcagccggctatcacaattctgccagcacaaatttttctaacccc |
209 |
Q |
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| T |
54266462 |
agagaaagaatttaacatagagccgattttacagacggccacaaacaaccatctttcagccggctatcacaattctgccagcacaaatttttctaacccc |
54266561 |
T |
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| Q |
210 |
attccttagcccatccctttaaattcttcttcacccaaacactatactataattcataaacattatttannnnnnnnnnnnnacctttcaaattaatgca |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |
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| T |
54266562 |
attccttagcccatccctttaaattcttcttcacccaaacactatactataattcataaacattttttttatttttatttttacctttcaaattaatgca |
54266661 |
T |
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| Q |
310 |
ccattaatactatat |
324 |
Q |
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||||||||||||||| |
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| T |
54266662 |
ccattaatactatat |
54266676 |
T |
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