View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17158_low_34 (Length: 323)
Name: NF17158_low_34
Description: NF17158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17158_low_34 |
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Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 12 - 306
Target Start/End: Complemental strand, 3568592 - 3568298
Alignment:
| Q |
12 |
agcaaaggagattgctctctagcagaaaccaaatcagtagaagccaaatcatcatgcacttcaacgtgctctacaaaacttgaaaccgacgcagctgcaa |
111 |
Q |
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| T |
3568592 |
agcaaaggagattcctctctagcagaaaccaaatcagtagaagccaaatcatcatgcacttcaacgtgctctacaaaacttgaaacggacgcagctgcaa |
3568493 |
T |
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| Q |
112 |
ccgaaaaaggaacatgcaagttcgtgttttctggctgcgtttgctccatttgaagaacttgcatgtcatcttgctcaacatcagtggccaactccaaaac |
211 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3568492 |
ccgaaaaaggaacatgcgagttcgtgttttctggctgcgtttgctccatttgaagaacttgcatgtcatcttgctcaacatcagtggccaactccaaaac |
3568393 |
T |
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| Q |
212 |
atggatatcaggacgaggaagtctaccttgaggaatatgatccgacacattcttcaaggtgaagctaaaggagttggcggaaatatccttggaag |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3568392 |
atggatatcaggacgaggaagtctaccttgaggaatatgatccgacacattcttcaaggtgaagctaaaggagttggcggaaatatccttggaag |
3568298 |
T |
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