View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17158_low_4 (Length: 657)
Name: NF17158_low_4
Description: NF17158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17158_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 491; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 124 - 639
Target Start/End: Original strand, 46456374 - 46456891
Alignment:
| Q |
124 |
gttaatgcaccacctccagaagatgatatcattttaccccctcactttggctcttcatatgcttcacctcctccaccaatcattgctggttactaaattt |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46456374 |
gttaatgcaccacctccagaagatgatatcattttaccccctcactttggctcttcatatgcttcacctcctccaccaatcattgctggttactaaattt |
46456473 |
T |
|
| Q |
224 |
aaacaaggccgataacttacttccacctttattagatcatagtctcaaagttgaggcatgatgacgcgacaagatctttatttgtatgctgaaatatttt |
323 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
46456474 |
aaacaaggcccataacttacttccacctttattagatcatagtctcaaagttgaggcatgatgacgcgacaagatctttatttatattctgaaatatttt |
46456573 |
T |
|
| Q |
324 |
gaattggcttcaataattgaaagagcaaaatgaagatgtattcataaacaatgttttaaaattatgatttaccaattcttttttgttgttgttgttgtat |
423 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46456574 |
gaattggcttcaataattgaaagagcaaaatgaagatgtattcataaacaatgttttaaaattatgatttaccaattcttttttgttgttgttgttgtat |
46456673 |
T |
|
| Q |
424 |
tacagtatagtgtaagaattgataatatcaacc--atatataatatattgtacggattcacacatgacattatacatagagatagaggtttcatcatata |
521 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46456674 |
tacattatagtgtaagaattgataatatcaaccatatatataatatattgtacggattcacacatgacattatacatagagatagaggtttcatcatata |
46456773 |
T |
|
| Q |
522 |
attgtatagatgagattaagttttcatgaagtcatttttacttatttatgtttaatcgtgaatgttactaactcatgatacttcccatgtctcgcacgct |
621 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46456774 |
attgtatagatgagattaagttttcatgaagtcatttttacttatttatgtttaatcgtgaatgttactaactcatgatacttcccatgtctcgcacgct |
46456873 |
T |
|
| Q |
622 |
cactttagtggttctatt |
639 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
46456874 |
cactttagtggttctatt |
46456891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University