View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17158_low_41 (Length: 278)

Name: NF17158_low_41
Description: NF17158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17158_low_41
NF17158_low_41
[»] chr2 (17 HSPs)
chr2 (11-263)||(6915171-6915423)
chr2 (164-262)||(10543505-10543603)
chr2 (164-262)||(10471307-10471405)
chr2 (164-262)||(28106207-28106305)
chr2 (164-244)||(27966389-27966469)
chr2 (164-262)||(10859023-10859121)
chr2 (95-151)||(10492777-10492833)
chr2 (100-152)||(28105350-28105402)
chr2 (95-158)||(10463585-10463648)
chr2 (111-158)||(10507349-10507396)
chr2 (95-146)||(10860707-10860758)
chr2 (95-157)||(10474161-10474223)
chr2 (95-151)||(7476566-7476622)
chr2 (95-146)||(10848803-10848854)
chr2 (181-243)||(9081351-9081413)
chr2 (95-152)||(7478731-7478788)
chr2 (171-235)||(10505487-10505551)
[»] chr7 (3 HSPs)
chr7 (164-262)||(15044800-15044898)
chr7 (91-162)||(15045570-15045641)
chr7 (11-64)||(15047553-15047606)
[»] chr8 (1 HSPs)
chr8 (96-147)||(44307022-44307073)
[»] chr5 (1 HSPs)
chr5 (164-262)||(33601026-33601124)


Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 11 - 263
Target Start/End: Original strand, 6915171 - 6915423
Alignment:
Q  11 agaacctgtgtcagaggtagatgatgtacttgctgaagcgtttcttagcgatgatgagaacatttcagctgctgaccttgagggagcaattcgtagggct 110  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6915171 agaaactgtgtcagaggtagatgatgtacttgctgaagcgtttcttagtgatgatgagaacatttcagctgctgaccttgagggagcaattcgtagggct 6915270  T
Q  111 accatagcacggaaatttataccggtattcatgggtagtgctgtcaaaaacacgggggtacaaccacttctggatggtgtagttacttatttgccttgtc 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  6915271 accatagcacggaaatttataccggtattcatgggtagtgctgtcaaaaacacgggggtacaaccacttctggatggtgtagttagttatttgccttgtc 6915370  T
Q  211 cgattgaagttagtaattatgctcttgaccaatccaagaatgaggagaaggtt 263  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6915371 cgattgaagttagtaattatgctcttgaccaatccaagaatgaggagaaggtt 6915423  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 164 - 262
Target Start/End: Complemental strand, 10543603 - 10543505
Alignment:
Q  164 gggggtacaaccacttctggatggtgtagttacttatttgccttgtccgattgaagttagtaattatgctcttgaccaatccaagaatgaggagaaggt 262  Q
    |||| |||||| |||| ||||||||||| ||| ||||||||| ||||| | ||||| ||||||||||||||| | |||||||||||||||||| |||||    
T  10543603 ggggttacaactacttttggatggtgtacttaattatttgccgtgtccaactgaagctagtaattatgctctcgtccaatccaagaatgaggaaaaggt 10543505  T

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Target: chr2; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 164 - 262
Target Start/End: Complemental strand, 10471405 - 10471307
Alignment:
Q  164 gggggtacaaccacttctggatggtgtagttacttatttgccttgtccgattgaagttagtaattatgctcttgaccaatccaagaatgaggagaaggt 262  Q
    |||| |||||| |||| ||||||||||| ||| ||||||||| ||||| | ||||| ||||||||||||||| | |||||| ||||||||||| |||||    
T  10471405 ggggctacaactacttttggatggtgtacttaattatttgccgtgtccaactgaagctagtaattatgctctcgtccaatctaagaatgaggaaaaggt 10471307  T

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Target: chr2; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 164 - 262
Target Start/End: Original strand, 28106207 - 28106305
Alignment:
Q  164 gggggtacaaccacttctggatggtgtagttacttatttgccttgtccgattgaagttagtaattatgctcttgaccaatccaagaatgaggagaaggt 262  Q
    |||| |||||| |||| ||||||||||| ||| ||||||||| ||||| ||||||| |||||||||| ||||||||||||| ||| ||| ||| |||||    
T  28106207 ggggctacaactacttttggatggtgtaattaattatttgccgtgtccaattgaagctagtaattatactcttgaccaatctaagcatggggaaaaggt 28106305  T

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Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 164 - 244
Target Start/End: Complemental strand, 27966469 - 27966389
Alignment:
Q  164 gggggtacaaccacttctggatggtgtagttacttatttgccttgtccgattgaagttagtaattatgctcttgaccaatc 244  Q
    |||| |||||| |||| ||||||||||| ||| ||||||||| ||||| ||||||| |||||||||| |||||||||||||    
T  27966469 ggggctacaactacttttggatggtgtaattaattatttgccgtgtccaattgaagctagtaattatactcttgaccaatc 27966389  T

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Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 164 - 262
Target Start/End: Complemental strand, 10859121 - 10859023
Alignment:
Q  164 gggggtacaaccacttctggatggtgtagttacttatttgccttgtccgattgaagttagtaattatgctcttgaccaatccaagaatgaggagaaggt 262  Q
    |||| |||||| |||| |||||||||||  || ||||||||| ||||| | |||||||||||||||| |||| ||| |||| ||||||| ||| |||||    
T  10859121 ggggctacaactacttttggatggtgtaactaattatttgccctgtccaactgaagttagtaattattctctcgacaaatctaagaatggggaaaaggt 10859023  T

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Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 95 - 151
Target Start/End: Complemental strand, 10492833 - 10492777
Alignment:
Q  95 agcaattcgtagggctaccatagcacggaaatttataccggtattcatgggtagtgc 151  Q
    ||||||||||||||| ||||||||||  |||||| ||||||| ||||||||||||||    
T  10492833 agcaattcgtagggcaaccatagcacataaatttgtaccggttttcatgggtagtgc 10492777  T

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Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 100 - 152
Target Start/End: Original strand, 28105350 - 28105402
Alignment:
Q  100 ttcgtagggctaccatagcacggaaatttataccggtattcatgggtagtgct 152  Q
    |||||||||| |||||||||||||| |||||||| ||||||||||||| ||||    
T  28105350 ttcgtagggccaccatagcacggaagtttataccagtattcatgggtaatgct 28105402  T

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Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 95 - 158
Target Start/End: Complemental strand, 10463648 - 10463585
Alignment:
Q  95 agcaattcgtagggctaccatagcacggaaatttataccggtattcatgggtagtgctgtcaaa 158  Q
    |||||||||||| || || ||||||||||||||||||||  | ||||||||||||||| |||||    
T  10463648 agcaattcgtagagccacgatagcacggaaatttataccatttttcatgggtagtgctttcaaa 10463585  T

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Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 158
Target Start/End: Complemental strand, 10507396 - 10507349
Alignment:
Q  111 accatagcacggaaatttataccggtattcatgggtagtgctgtcaaa 158  Q
    ||||||||||||||||||||||| ||||||||||| |||||| |||||    
T  10507396 accatagcacggaaatttatacccgtattcatgggcagtgctttcaaa 10507349  T

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Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 95 - 146
Target Start/End: Complemental strand, 10860758 - 10860707
Alignment:
Q  95 agcaattcgtagggctaccatagcacggaaatttataccggtattcatgggt 146  Q
    |||| |||||||||  ||||||||||||||||||||||| ||||||||||||    
T  10860758 agcagttcgtagggtcaccatagcacggaaatttataccagtattcatgggt 10860707  T

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Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 157
Target Start/End: Complemental strand, 10474223 - 10474161
Alignment:
Q  95 agcaattcgtagggctaccatagcacggaaatttataccggtattcatgggtagtgctgtcaa 157  Q
    |||| |||||||||| |||||||||||||| ||||||||  |||||||||| |||||| ||||    
T  10474223 agcagttcgtagggccaccatagcacggaagtttataccaatattcatgggcagtgctttcaa 10474161  T

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Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 151
Target Start/End: Original strand, 7476566 - 7476622
Alignment:
Q  95 agcaattcgtagggctaccatagcacggaaatttataccggtattcatgggtagtgc 151  Q
    |||||||| |||||| || ||||||| ||||||| ||||||| ||||||||||||||    
T  7476566 agcaattcatagggcaactatagcacagaaatttgtaccggttttcatgggtagtgc 7476622  T

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Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 95 - 146
Target Start/End: Complemental strand, 10848854 - 10848803
Alignment:
Q  95 agcaattcgtagggctaccatagcacggaaatttataccggtattcatgggt 146  Q
    |||| |||||||||| ||||||||||  ||||||||||| ||||||||||||    
T  10848854 agcagttcgtagggccaccatagcacacaaatttataccagtattcatgggt 10848803  T

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Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 243
Target Start/End: Original strand, 9081351 - 9081413
Alignment:
Q  181 tggatggtgtagttacttatttgccttgtccgattgaagttagtaattatgctcttgaccaat 243  Q
    ||||||||||| ||| ||||||||| ||||| |||||||  ||||||||||| || |||||||    
T  9081351 tggatggtgtacttaattatttgccgtgtccaattgaagcaagtaattatgcgctcgaccaat 9081413  T

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Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 152
Target Start/End: Original strand, 7478731 - 7478788
Alignment:
Q  95 agcaattcgtagggctaccatagcacggaaatttataccggtattcatgggtagtgct 152  Q
    |||| ||| |||||| |||| |||||| |||||||||||||| |||||||| ||||||    
T  7478731 agcagttcttagggcaaccagagcacgcaaatttataccggtcttcatgggcagtgct 7478788  T

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Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 235
Target Start/End: Complemental strand, 10505551 - 10505487
Alignment:
Q  171 caaccacttctggatggtgtagttacttatttgccttgtccgattgaagttagtaattatgctct 235  Q
    |||| |||| ||||||||||  ||| ||||||||| ||||| | ||||| |||||||||||||||    
T  10505551 caactacttttggatggtgtgcttaattatttgccgtgtccaactgaagctagtaattatgctct 10505487  T

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Target: chr7 (Bit Score: 59; Significance: 5e-25; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 164 - 262
Target Start/End: Complemental strand, 15044898 - 15044800
Alignment:
Q  164 gggggtacaaccacttctggatggtgtagttacttatttgccttgtccgattgaagttagtaattatgctcttgaccaatccaagaatgaggagaaggt 262  Q
    |||| ||||||||||||||||||||||| ||| ||||||||| ||||| |||||||||| ||||||||| ||||||||||| || || |||||||||||    
T  15044898 ggggatacaaccacttctggatggtgtacttagttatttgccatgtccaattgaagttaataattatgcccttgaccaatctaataaggaggagaaggt 15044800  T

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Target: chr7; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 91 - 162
Target Start/End: Complemental strand, 15045641 - 15045570
Alignment:
Q  91 agggagcaattcgtagggctaccatagcacggaaatttataccggtattcatgggtagtgctgtcaaaaaca 162  Q
    ||||||| ||||||||||||||| | || ||||||||||||||||||||||||||||||||| |||||||||    
T  15045641 agggagccattcgtagggctaccgtggcgcggaaatttataccggtattcatgggtagtgctttcaaaaaca 15045570  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 64
Target Start/End: Complemental strand, 15047606 - 15047553
Alignment:
Q  11 agaacctgtgtcagaggtagatgatgtacttgctgaagcgtttcttagcgatga 64  Q
    |||| ||||||||||||| |||||| ||||||| |||||||||||||| |||||    
T  15047606 agaaactgtgtcagaggttgatgatatacttgcggaagcgtttcttagtgatga 15047553  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 96 - 147
Target Start/End: Complemental strand, 44307073 - 44307022
Alignment:
Q  96 gcaattcgtagggctaccatagcacggaaatttataccggtattcatgggta 147  Q
    |||||||||||||| |||||||||||||||||| ||||  | ||||||||||    
T  44307073 gcaattcgtagggcaaccatagcacggaaatttgtaccaattttcatgggta 44307022  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 262
Target Start/End: Complemental strand, 33601124 - 33601026
Alignment:
Q  164 gggggtacaaccacttctggatggtgtagttacttatttgccttgtccgattgaagttagtaattatgctcttgaccaatccaagaatgaggagaaggt 262  Q
    |||| ||||||||||| ||||||||||  ||| | ||||||| ||||| | |||||  | ||||||||||||   |||||| ||||||||||| |||||    
T  33601124 ggggctacaaccacttttggatggtgtgcttaataatttgccgtgtccaactgaagcaactaattatgctctcatccaatctaagaatgaggaaaaggt 33601026  T

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