View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17158_low_42 (Length: 266)
Name: NF17158_low_42
Description: NF17158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17158_low_42 |
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| [»] scaffold0392 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 8 - 248
Target Start/End: Complemental strand, 11143968 - 11143728
Alignment:
| Q |
8 |
cagcacagaattaagatattgaacacaaccactcaaaatgttaagttatgagagaaataacaagatcttgaatattattgataatagcttgatgctaact |
107 |
Q |
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| T |
11143968 |
cagcacagaattaagatattgaacacaaccactcaaaatgttacgttatgagagaaataacgagatcttgaatattattgataatagcttgatgctaact |
11143869 |
T |
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| Q |
108 |
tgatacaaactagaaactagcccctatatacagagatacgagactctaataatgaaaagggaaattaagaccaaacatttgaaggagaacaaggtttgaa |
207 |
Q |
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| T |
11143868 |
tgatacaaactagacactaacccctatatacagagatacgagactctaataatgaagagggaaattaagaccagacatttgaaggagaacaaggtttgaa |
11143769 |
T |
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| Q |
208 |
agactagacatttgaaggttgatcaaacctcgtgatgggat |
248 |
Q |
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| T |
11143768 |
agactagacatttgaaggttgatcaaacctcgtgatgggat |
11143728 |
T |
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Target: scaffold0392 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0392
Description:
Target: scaffold0392; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 65 - 116
Target Start/End: Complemental strand, 9760 - 9709
Alignment:
| Q |
65 |
taacaagatcttgaatattattgataatagcttgatgctaacttgatacaaa |
116 |
Q |
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| T |
9760 |
taacaagagcttgaatattattgataatagtttgatgctaacttgatacaaa |
9709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 55 - 116
Target Start/End: Original strand, 18313664 - 18313725
Alignment:
| Q |
55 |
atgagagaaataacaagatcttgaatattattgataatagcttgatgctaacttgatacaaa |
116 |
Q |
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| T |
18313664 |
atgagaaaaataataagagtttgaatattattgataatagcttgatacaaacttcatacaaa |
18313725 |
T |
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