View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17158_low_45 (Length: 259)
Name: NF17158_low_45
Description: NF17158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17158_low_45 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 24 - 255
Target Start/End: Original strand, 27873940 - 27874171
Alignment:
| Q |
24 |
ttttttcctcataacacaagccacgcgttcataactatgctaaagtccaaaagaagcataattgaattcaagttgcaatctcaaattatctttgacatga |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27873940 |
ttttttcctcataacacaagccacgcgttcataactatactaaagtccaaaagaagcataattgaattcaagttgcaatctcaaattatctttgacatga |
27874039 |
T |
|
| Q |
124 |
aattttactgtactagctatatatcacttgaaacgtgttgtacgttggttgcataatgcactctgaatctctgataaaacttatcctataaaaatccata |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
27874040 |
aattttactgtactagctatatatcacttgaaacgtgttgtacgttggttgcataatgcactctgaatctctaataaaacttatcctataaaaatccata |
27874139 |
T |
|
| Q |
224 |
ttcacttttagcaaagaccattcatctcactc |
255 |
Q |
| |
|
||||||||||||||||||| |||||| ||||| |
|
|
| T |
27874140 |
ttcacttttagcaaagacctttcatcacactc |
27874171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University