View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17158_low_5 (Length: 643)
Name: NF17158_low_5
Description: NF17158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17158_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 582; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 582; E-Value: 0
Query Start/End: Original strand, 17 - 630
Target Start/End: Original strand, 3575468 - 3576080
Alignment:
| Q |
17 |
caggattctggaaagctacaggaagagacaaagcaatttattcaaaccatatttgtctgattggaatgagaaagactcttgtcttctataaaggaagagc |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3575468 |
caggattctggaaagctacaggaagagacaaagcaatttattctaaccatatttgtctgattggaatgagaaagactcttgtcttctataaaggaagagc |
3575567 |
T |
|
| Q |
117 |
acctaatggtcaaaaatctgattggatcatgcatgagtatcgcttagaaacaaatgaaaatggaactactcctcaggtaataatacttataataagcaca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3575568 |
acctaatggtcaaaaatctgattggatcatgcatgagtatcgcttagaaacaaatgaaaatggaactactcctcaggtaataatacttataataagcaca |
3575667 |
T |
|
| Q |
217 |
tatttaatattttctttctttttctgaaaaacaagaatatatatattatcatcttgtctaatgtaataagcacatattttataggaagaaggatgggttg |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||| ||| | | ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3575668 |
tatttaatattttctttctttttctgaaaaacaagaatatat-tatcatcttgtcgtctaatgtaataagcacatattttataggaagaaggatgggttg |
3575766 |
T |
|
| Q |
317 |
tgtgtaaagtgttcaagaaacgaatagctacaacaatgaggaaaatggacgattcaccatgttggtatgatgatcaagtatcattcatgcaatcagagct |
416 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3575767 |
tgtgtaaagtgttcaagaaacgaatagctacaacaatgaggaaaatggacgattcaccatgttggtatgatgatcaagtatcattcatgcaatcagagct |
3575866 |
T |
|
| Q |
417 |
tgaatccccaagcagaatttcttctcatcacccttataatgcatcataccaacatcaacaacagcattacccttgcaaacaagagttggatcaattgcaa |
516 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
3575867 |
tgaatccccaagcagaatttcttctcatcacccttataatgcatcataccaacatcaacaacagcattatccttgcaaacaagagttggatcaattgcaa |
3575966 |
T |
|
| Q |
517 |
tacaatatacacattaataataatgatgctaataatttcctacaacttccacaactagaaaacctcaattctcctatgcaatgctcattatcaacacatt |
616 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3575967 |
tacaatatacacattaataataatgatgctaataatttcctacaacttccacaactagaaaacctcaattctcctatgcaatgctcattatcaacacatt |
3576066 |
T |
|
| Q |
617 |
caatgactcaagaa |
630 |
Q |
| |
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|||||||||||||| |
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| T |
3576067 |
caatgactcaagaa |
3576080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 76 - 152
Target Start/End: Original strand, 8450197 - 8450273
Alignment:
| Q |
76 |
attggaatgagaaagactcttgtcttctataaaggaagagcacctaatggtcaaaaatctgattggatcatgcatga |
152 |
Q |
| |
|
||||| ||||| ||||| ||||| ||||| ||||||||||| |||||||| || ||||||||||||||||||||||| |
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| T |
8450197 |
attgggatgaggaagacccttgttttctacaaaggaagagcccctaatggacagaaatctgattggatcatgcatga |
8450273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 3e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 75 - 156
Target Start/End: Original strand, 9003367 - 9003448
Alignment:
| Q |
75 |
gattggaatgagaaagactcttgtcttctataaaggaagagcacctaatggtcaaaaatctgattggatcatgcatgagtat |
156 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||| | || ||| |||| |||||||||||||||||||||||||||||| |
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| T |
9003367 |
gattggaatgagaaagactcttgttttctacaaaggtcgtgctcctcatggccaaaaatctgattggatcatgcatgagtat |
9003448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 73 - 152
Target Start/End: Complemental strand, 32225607 - 32225528
Alignment:
| Q |
73 |
ctgattggaatgagaaagactcttgtcttctataaaggaagagcacctaatggtcaaaaatctgattggatcatgcatga |
152 |
Q |
| |
|
|||||||||||||| ||||| || || ||||| |||||||||||||||||||| || ||| ||||||||||||||||||| |
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| T |
32225607 |
ctgattggaatgaggaagacactcgttttctacaaaggaagagcacctaatggacagaaaactgattggatcatgcatga |
32225528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 3e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 17 - 181
Target Start/End: Complemental strand, 42048644 - 42048483
Alignment:
| Q |
17 |
caggattctggaaagctacaggaagagacaaagcaatttattcaaaccatatttgtctgattggaatgagaaagactcttgtcttctataaaggaagagc |
116 |
Q |
| |
|
|||||||||||||||| ||||||||||| || ||||| || ||||| || |||| ||| |||| |||||||||||||| || || || |||||| | || |
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| T |
42048644 |
caggattctggaaagccacaggaagagataaggcaatatactcaaaaca-attt--ctggttgggatgagaaagactctagtgttttacaaaggacgtgc |
42048548 |
T |
|
| Q |
117 |
acctaatggtcaaaaatctgattggatcatgcatgagtatcgcttagaaacaaatgaaaatggaa |
181 |
Q |
| |
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|| ||||| || |||||||||||||||||||||||||| || | ||||| ||| ||||||||| |
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| T |
42048547 |
cccaaatggacagaaatctgattggatcatgcatgagtaccgtcttgaaactaatcaaaatggaa |
42048483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 76 - 152
Target Start/End: Original strand, 12276670 - 12276746
Alignment:
| Q |
76 |
attggaatgagaaagactcttgtcttctataaaggaagagcacctaatggtcaaaaatctgattggatcatgcatga |
152 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||| ||||| ||| |||| ||||| |||||||||| |||||||| |
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| T |
12276670 |
attggaatgagaaagactcttgtgttctacaaaggtagagctcctcatggacaaaagactgattggattatgcatga |
12276746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 122 - 158
Target Start/End: Original strand, 26496938 - 26496974
Alignment:
| Q |
122 |
atggtcaaaaatctgattggatcatgcatgagtatcg |
158 |
Q |
| |
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||||||| ||| ||||||||||||||||||||||||| |
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|
| T |
26496938 |
atggtcacaaaactgattggatcatgcatgagtatcg |
26496974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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