View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17158_low_55 (Length: 243)

Name: NF17158_low_55
Description: NF17158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17158_low_55
NF17158_low_55
[»] chr7 (11 HSPs)
chr7 (22-243)||(8591459-8591680)
chr7 (97-236)||(8602802-8602941)
chr7 (112-184)||(8635409-8635481)
chr7 (99-236)||(29576886-29577023)
chr7 (113-243)||(8647762-8647892)
chr7 (108-186)||(29581071-29581149)
chr7 (99-236)||(8610732-8610869)
chr7 (119-199)||(8560800-8560881)
chr7 (206-243)||(13332154-13332191)
chr7 (140-236)||(8577357-8577453)
chr7 (195-243)||(8655410-8655458)
[»] chr2 (1 HSPs)
chr2 (143-236)||(12257855-12257948)
[»] chr8 (1 HSPs)
chr8 (143-228)||(43745897-43745982)
[»] chr5 (1 HSPs)
chr5 (143-228)||(28221023-28221108)
[»] chr1 (1 HSPs)
chr1 (143-228)||(34465189-34465274)


Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 22 - 243
Target Start/End: Complemental strand, 8591680 - 8591459
Alignment:
Q  22 gaaatataaaacacttctatatctctttcatttataaattcagattattattataattcttcaagaaaagacttgaatcacttgagagagaatggccaaa 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  8591680 gaaatataaaacacttctatatctctttcatttataaattcagattattattataattcttcaagaaaagacttgaatcacttgagagaggatggccaaa 8591581  T
Q  122 aaacacaaaggtccagcaattggaattgaccttggcacaacgtattcatgtgtcgcagtttggcaaggccaaaacaatagagcagagattattcacaacg 221  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||| |||||||||||||||||| |    
T  8591580 aaacacaagggtccagcaattggaattgaccttggcacaacgtattcatgtgtagcagtttggcaggaccaaaacaatacagcagagattattcacaatg 8591481  T
Q  222 atcaaggaaatagaattacacc 243  Q
    ||||||||||||||||||||||    
T  8591480 atcaaggaaatagaattacacc 8591459  T

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Target: chr7; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 97 - 236
Target Start/End: Complemental strand, 8602941 - 8602802
Alignment:
Q  97 aatcacttgagagagaatggccaaaaaacacaaaggtccagcaattggaattgaccttggcacaacgtattcatgtgtcgcagtttggcaaggccaaaac 196  Q
    |||||||| | | |||||||| ||||||  ||| |||||||| ||||| ||||||||||| ||||| ||||||||||| || |||||||| | |||||||    
T  8602941 aatcacttcaaacagaatggcaaaaaaattcaagggtccagcgattggtattgaccttggaacaacctattcatgtgtagctgtttggcaggaccaaaac 8602842  T
Q  197 aatagagcagagattattcacaacgatcaaggaaatagaa 236  Q
    || || ||||||||||||||||| ||||||||||| ||||    
T  8602841 aacagggcagagattattcacaatgatcaaggaaacagaa 8602802  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 112 - 184
Target Start/End: Original strand, 8635409 - 8635481
Alignment:
Q  112 aatggccaaaaaacacaaaggtccagcaattggaattgaccttggcacaacgtattcatgtgtcgcagtttgg 184  Q
    ||||||||||||| || | || || ||||||||||| |||||||||||||| ||||||||||| |||||||||    
T  8635409 aatggccaaaaaatacgagggacctgcaattggaatcgaccttggcacaacatattcatgtgtagcagtttgg 8635481  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 236
Target Start/End: Original strand, 29576886 - 29577023
Alignment:
Q  99 tcacttgagagagaatggccaaaaaacacaaaggtccagcaattggaattgaccttggcacaacgtattcatgtgtcgcagtttggcaaggccaaaacaa 198  Q
    |||||||| | ||||||||||||||| |  |||| || || |||||||| ||||||||||| || |||||||| || |||||||||||    |  |||||    
T  29576886 tcacttgaaacagaatggccaaaaaatatgaaggacctgccattggaatcgaccttggcacgacctattcatgcgtagcagtttggcagcagcgtaacaa 29576985  T
Q  199 tagagcagagattattcacaacgatcaaggaaatagaa 236  Q
    | |||| ||||| || ||||| |||||||| |||||||    
T  29576986 tcgagctgagatcatccacaatgatcaaggcaatagaa 29577023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 113 - 243
Target Start/End: Complemental strand, 8647892 - 8647762
Alignment:
Q  113 atggccaaaaaacacaaaggtccagcaattggaattgaccttggcacaacgtattcatgtgtcgcagtttggcaaggccaaaacaatagagcagagatta 212  Q
    ||||| ||||||||| |||| |  ||| | ||||| |||||||| ||||||||||| ||||| || || ||||  |   || |||||||||  |||||||    
T  8647892 atggcgaaaaaacacgaaggacttgcagtgggaatagaccttggaacaacgtattcgtgtgttgctgtgtggcttgatgaacacaatagagttgagatta 8647793  T
Q  213 ttcacaacgatcaaggaaatagaattacacc 243  Q
    ||||||| ||||||||||| |||| ||||||    
T  8647792 ttcacaatgatcaaggaaacagaactacacc 8647762  T

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Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 108 - 186
Target Start/End: Original strand, 29581071 - 29581149
Alignment:
Q  108 agagaatggccaaaaaacacaaaggtccagcaattggaattgaccttggcacaacgtattcatgtgtcgcagtttggca 186  Q
    ||||||||||||||||| |  |||| || || || ||||| ||||| |||||||| ||||||||||| |||||||||||    
T  29581071 agagaatggccaaaaaatatgaaggacctgctatcggaatcgacctcggcacaacctattcatgtgtagcagtttggca 29581149  T

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Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 236
Target Start/End: Complemental strand, 8610869 - 8610732
Alignment:
Q  99 tcacttgagagagaatggccaaaaaacacaaaggtccagcaattggaattgaccttggcacaacgtattcatgtgtcgcagtttggcaaggccaaaacaa 198  Q
    ||||| || ||||||||||||||||| |  | || || || ||||||||||| ||||| ||||| ||||||||||| || || ||||| |  ||||||||    
T  8610869 tcactagaaagagaatggccaaaaaatatgagggacctgctattggaattgatcttggaacaacctattcatgtgttgctgtatggcaggaacaaaacaa 8610770  T
Q  199 tagagcagagattattcacaacgatcaaggaaatagaa 236  Q
     ||||| ||||| || || || || |||||||| ||||    
T  8610769 cagagctgagataatccataatgagcaaggaaacagaa 8610732  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 199
Target Start/End: Complemental strand, 8560881 - 8560800
Alignment:
Q  119 aaaaaacacaaaggtccagcaa-ttggaattgaccttggcacaacgtattcatgtgtcgcagtttggcaaggccaaaacaat 199  Q
    |||||| || |||||||||||| |||||||||||||||| ||||| || |||||||| | ||| ||||| |  |||||||||    
T  8560881 aaaaaatacgaaggtccagcaaattggaattgaccttggaacaacctactcatgtgttggagtatggcaggagcaaaacaat 8560800  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 206 - 243
Target Start/End: Original strand, 13332154 - 13332191
Alignment:
Q  206 gagattattcacaacgatcaaggaaatagaattacacc 243  Q
    |||||||||||||| |||||||||||||||| ||||||    
T  13332154 gagattattcacaatgatcaaggaaatagaactacacc 13332191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 236
Target Start/End: Complemental strand, 8577453 - 8577357
Alignment:
Q  140 attggaattgaccttggcacaacgtattcatgtgtcgcagtttggcaaggccaaaacaatagagcagagattattcacaacgatcaaggaaatagaa 236  Q
    |||||||||||||||||||| || || |||||||| | ||| ||||| |  |||||| || | | ||| ||||| ||||| ||||||||||| ||||    
T  8577453 attggaattgaccttggcacgacttactcatgtgttggagtatggcatgaacaaaacgatcgtgtagaaattatacacaatgatcaaggaaacagaa 8577357  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 243
Target Start/End: Complemental strand, 8655458 - 8655410
Alignment:
Q  195 acaatagagcagagattattcacaacgatcaaggaaatagaattacacc 243  Q
    |||||||||  |||||||||||||| |||||||| ||||||| ||||||    
T  8655458 acaatagagttgagattattcacaatgatcaaggcaatagaactacacc 8655410  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 236
Target Start/End: Original strand, 12257855 - 12257948
Alignment:
Q  143 ggaattgaccttggcacaacgtattcatgtgtcgcagtttggcaaggccaaaacaatagagcagagattattcacaacgatcaaggaaatagaa 236  Q
    ||||||||||||||||||||||||||||| || || |||||||| |  ||| |   | |||| ||||| |||||||||||||||||||| ||||    
T  12257855 ggaattgaccttggcacaacgtattcatgcgttgctgtttggcaggaacaatattgtcgagctgagatcattcacaacgatcaaggaaacagaa 12257948  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 228
Target Start/End: Complemental strand, 43745982 - 43745897
Alignment:
Q  143 ggaattgaccttggcacaacgtattcatgtgtcgcagtttggcaaggccaaaacaatagagcagagattattcacaacgatcaagg 228  Q
    ||||| |||||||| ||||||||||| ||||| || || |||||||   || | |||||||  |||||||||||||| ||||||||    
T  43745982 ggaatagaccttggaacaacgtattcgtgtgttgctgtgtggcaagatgaacaaaatagagttgagattattcacaatgatcaagg 43745897  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 228
Target Start/End: Complemental strand, 28221108 - 28221023
Alignment:
Q  143 ggaattgaccttggcacaacgtattcatgtgtcgcagtttggcaaggccaaaacaatagagcagagattattcacaacgatcaagg 228  Q
    ||||| || ||||| ||||||||||||||||| || || |||||||   || ||||||| |  |||||||||||||| ||||||||    
T  28221108 ggaatagatcttggaacaacgtattcatgtgttgctgtgtggcaagatgaacacaatagggttgagattattcacaatgatcaagg 28221023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 228
Target Start/End: Original strand, 34465189 - 34465274
Alignment:
Q  143 ggaattgaccttggcacaacgtattcatgtgtcgcagtttggcaaggccaaaacaatagagcagagattattcacaacgatcaagg 228  Q
    ||||| |||||||||||||| || |||||||| ||||| ||||| |  ||| ||| ||||| |||||||||| |||| || |||||    
T  34465189 ggaatagaccttggcacaacctactcatgtgttgcagtatggcaggaacaacacagtagagtagagattattgacaatgaccaagg 34465274  T

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