View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17158_low_58 (Length: 239)

Name: NF17158_low_58
Description: NF17158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17158_low_58
NF17158_low_58
[»] chr5 (6 HSPs)
chr5 (96-221)||(23311958-23312085)
chr5 (2-98)||(23311839-23311930)
chr5 (1-95)||(35943607-35943702)
chr5 (7-57)||(18398638-18398688)
chr5 (34-78)||(33270082-33270126)
chr5 (20-76)||(43101123-43101179)
[»] chr1 (4 HSPs)
chr1 (135-211)||(23325589-23325665)
chr1 (20-65)||(8041071-8041116)
chr1 (35-82)||(32191247-32191294)
chr1 (2-82)||(39126982-39127062)
[»] chr3 (2 HSPs)
chr3 (1-82)||(15513390-15513471)
chr3 (28-82)||(6588415-6588469)
[»] chr8 (3 HSPs)
chr8 (7-72)||(21150268-21150331)
chr8 (36-82)||(34273054-34273100)
chr8 (2-63)||(9030669-9030730)
[»] chr2 (3 HSPs)
chr2 (20-82)||(15605477-15605539)
chr2 (1-65)||(30481635-30481699)
chr2 (20-80)||(33710707-33710767)
[»] scaffold0110 (1 HSPs)
scaffold0110 (1-78)||(31324-31401)
[»] chr7 (3 HSPs)
chr7 (29-93)||(31726554-31726619)
chr7 (35-93)||(28557369-28557428)
chr7 (20-82)||(16757898-16757960)
[»] chr4 (3 HSPs)
chr4 (7-80)||(40423240-40423313)
chr4 (20-82)||(24672641-24672703)
chr4 (7-64)||(7379531-7379588)
[»] chr6 (1 HSPs)
chr6 (18-62)||(1944713-1944757)


Alignment Details
Target: chr5 (Bit Score: 113; Significance: 2e-57; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 96 - 221
Target Start/End: Original strand, 23311958 - 23312085
Alignment:
Q  96 aaacaaaatttattaataataagaaaactaacacaagataagatgtgcaaagctgctccaaaattgcgaactaagttacaaagaaaat--tgtcaaccat 193  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||||||||||    
T  23311958 aaacaaaatttattaataataagaaaactaacacaagataagatgtgcaaagctgctccaaaattgcaaactaagttacaaagaaaattgtgtcaaccat 23312057  T
Q  194 acaaagtgaaacaaacacttgagagacc 221  Q
    ||||||||||||||||||||||||||||    
T  23312058 acaaagtgaaacaaacacttgagagacc 23312085  T

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Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 2 - 98
Target Start/End: Original strand, 23311839 - 23311930
Alignment:
Q  2 gtgaattaacttacgttaaaaaatatcgagcttgagttaactcacgctgaattaagagaatgagaaattttaaaagggagagaacaattttcgaaaa 98  Q
    |||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||     |||||||||||||||| |||||    
T  23311839 gtgagttaacttacgttaaaaaatatcgagcttgagttaatttacgctgaattaagagaatgagaaattt-----gggagagaacaatttttgaaaa 23311930  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 35943607 - 35943702
Alignment:
Q  1 tgtgaattaacttacgttaaaaaatatcgagcttgagttaactcacgctgaattaagagaatgagaaatttt-aaaagggagagaacaattttcga 95  Q
    |||||||||||||||  | |||||| |||||  ||| ||||||||||| |||||||| ||||||| |||||| ||| |||| ||| ||||||||||    
T  35943607 tgtgaattaacttacactgaaaaatgtcgagtgtgaattaactcacgcggaattaagggaatgagcaattttgaaaggggaaagagcaattttcga 35943702  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 57
Target Start/End: Original strand, 18398638 - 18398688
Alignment:
Q  7 ttaacttacgttaaaaaatatcgagcttgagttaactcacgctgaattaag 57  Q
    |||||| ||||| ||||||||||||| |||||||||||| |||||||||||    
T  18398638 ttaactcacgttgaaaaatatcgagcgtgagttaactcatgctgaattaag 18398688  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 33270082 - 33270126
Alignment:
Q  34 tgagttaactcacgctgaattaagagaatgagaaattttaaaagg 78  Q
    |||||||||||||||||||||||| ||||||  |||||| |||||    
T  33270082 tgagttaactcacgctgaattaagggaatgaacaattttgaaagg 33270126  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 43101179 - 43101123
Alignment:
Q  20 aaaaatatcgagcttgagttaactcacgctgaattaagagaatgagaaattttaaaa 76  Q
    |||||| |||||| |||||||||||||| |||||||||  ||||||  |||||||||    
T  43101179 aaaaatgtcgagcgtgagttaactcacgttgaattaaggtaatgagtcattttaaaa 43101123  T

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Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 135 - 211
Target Start/End: Complemental strand, 23325665 - 23325589
Alignment:
Q  135 aagatgtgcaaagctgctccaaaattgcgaactaagttacaaagaaaattgtcaaccatacaaagtgaaacaaacac 211  Q
    |||||||||||| | ||||||||||||| ||| |||||||||||| ||||||||||||||||| |||||||||||||    
T  23325665 aagatgtgcaaaaccgctccaaaattgcaaacaaagttacaaagagaattgtcaaccatacaaggtgaaacaaacac 23325589  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 8041116 - 8041071
Alignment:
Q  20 aaaaatatcgagcttgagttaactcacgctgaattaagagaatgag 65  Q
    |||||| |||||| ||||||||||||||||||||||||| ||||||    
T  8041116 aaaaatgtcgagcgtgagttaactcacgctgaattaagaaaatgag 8041071  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 82
Target Start/End: Original strand, 32191247 - 32191294
Alignment:
Q  35 gagttaactcacgctgaattaagagaatgagaaattttaaaagggaga 82  Q
    ||||||||||| ||||| ||||||||||||| |||||||| |||||||    
T  32191247 gagttaactcatgctgagttaagagaatgagtaattttaagagggaga 32191294  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 82
Target Start/End: Original strand, 39126982 - 39127062
Alignment:
Q  2 gtgaattaacttacgttaaaaaatatcgagcttgagttaactcacgctgaattaagagaatgagaaattttaaaagggaga 82  Q
    |||| |||||| ||| | |||||| |||||| |||||||| ||||||| |||||||| || |   ||||||||||||||||    
T  39126982 gtgagttaactcacgctgaaaaatgtcgagcgtgagttaaatcacgctaaattaagataaaggtcaattttaaaagggaga 39127062  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 15513471 - 15513390
Alignment:
Q  1 tgtgaattaacttacgttaaaaaatatcgagcttgagttaactcacgctgaattaagagaatgagaaattttaaaagggaga 82  Q
    ||||| |||| | ||||| |||||| |||| | ||||||||||||||| |||||||||||||||| |||||| ||| |||||    
T  15513471 tgtgagttaattcacgttgaaaaatgtcgaacgtgagttaactcacgcagaattaagagaatgagtaattttgaaaaggaga 15513390  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 28 - 82
Target Start/End: Original strand, 6588415 - 6588469
Alignment:
Q  28 cgagcttgagttaactcacgctgaattaagagaatgagaaattttaaaagggaga 82  Q
    ||||| ||||||||||||||||| || ||||||||||  ||||||||||||||||    
T  6588415 cgagcgtgagttaactcacgctggatcaagagaatgatcaattttaaaagggaga 6588469  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 72
Target Start/End: Original strand, 21150268 - 21150331
Alignment:
Q  7 ttaacttacgttaaaaaatatcgagcttgagttaactcacgctgaattaagagaatgagaaatttt 72  Q
    |||||| ||||| ||||||||||||  ||||||||||||| || ||||||||||||||| ||||||    
T  21150268 ttaactcacgttgaaaaatatcgag--tgagttaactcacactaaattaagagaatgagcaatttt 21150331  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 82
Target Start/End: Complemental strand, 34273100 - 34273054
Alignment:
Q  36 agttaactcacgctgaattaagagaatgagaaattttaaaagggaga 82  Q
    |||||||||||||||| |||||  |||||| ||||||||||||||||    
T  34273100 agttaactcacgctgagttaaggaaatgagcaattttaaaagggaga 34273054  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 9030669 - 9030730
Alignment:
Q  2 gtgaattaacttacgttaaaaaatatcgagcttgagttaactcacgctgaattaagagaatg 63  Q
    ||||||||||| ||||| ||||||   |||| ||||||||||||| | ||||||||||||||    
T  9030669 gtgaattaactcacgttgaaaaatgctgagcctgagttaactcacaccgaattaagagaatg 9030730  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 15605477 - 15605539
Alignment:
Q  20 aaaaatatcgagcttgagttaactcacgctgaattaagagaatgagaaattttaaaagggaga 82  Q
    |||||||  |||||||||||||||| || ||||| ||| |||||||||||||| |||||||||    
T  15605477 aaaaatactgagcttgagttaactcccgatgaataaagggaatgagaaattttgaaagggaga 15605539  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 30481699 - 30481635
Alignment:
Q  1 tgtgaattaacttacgttaaaaaatatcgagcttgagttaactcacgctgaattaagagaatgag 65  Q
    ||||| |||||| ||| |||||||| |||| | ||||||||||| || |||||||||||||||||    
T  30481699 tgtgagttaactcacgctaaaaaatgtcgaacatgagttaactcgcgatgaattaagagaatgag 30481635  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 33710707 - 33710767
Alignment:
Q  20 aaaaatatcgagcttgagttaactcacgctgaattaagagaatgagaaattttaaaaggga 80  Q
    |||||||| |||| |||||||||||||| |||||||||  ||||| || ||||||||||||    
T  33710707 aaaaatattgagcatgagttaactcacgttgaattaaggaaatgaaaatttttaaaaggga 33710767  T

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Target: scaffold0110 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 31401 - 31324
Alignment:
Q  1 tgtgaattaacttacgttaaaaaatatcgagcttgagttaactcacgctgaattaagagaatgagaaattttaaaagg 78  Q
    ||||| |||||| ||| | ||||||  ||| | |||||||||||| ||||||||||||||||||| |||||| |||||    
T  31401 tgtgagttaactcacgctgaaaaatgccgaacgtgagttaactcatgctgaattaagagaatgagcaattttgaaagg 31324  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 93
Target Start/End: Complemental strand, 31726619 - 31726554
Alignment:
Q  29 gagcttgagttaactcacgctgaattaagagaatgagaaattttaaaagggag-agaacaattttc 93  Q
    |||| |||||||||||||| ||||||||| ||||| | |||||||| |||||| ||||||||||||    
T  31726619 gagcatgagttaactcacgatgaattaagggaatgggcaattttaagagggagaagaacaattttc 31726554  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 93
Target Start/End: Original strand, 28557369 - 28557428
Alignment:
Q  35 gagttaactcacgctgaattaagagaatgagaaattttaaaagggag-agaacaattttc 93  Q
    ||||||||||  ||||| |||| |||||||| ||||||||||||||| ||||||||||||    
T  28557369 gagttaactcttgctgagttaaaagaatgagtaattttaaaagggagaagaacaattttc 28557428  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 16757960 - 16757898
Alignment:
Q  20 aaaaatatcgagcttgagttaactcacgctgaattaagagaatgagaaattttaaaagggaga 82  Q
    ||||||||||| | ||| ||||| |||| |||| |||| ||||||| ||||||||||||||||    
T  16757960 aaaaatatcgaacgtgaattaacccacgttgaactaagggaatgagcaattttaaaagggaga 16757898  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 80
Target Start/End: Complemental strand, 40423313 - 40423240
Alignment:
Q  7 ttaacttacgttaaaaaatatcgagcttgagttaactcacgctgaattaagagaatgagaaattttaaaaggga 80  Q
    ||||||| |||| |||||| || ||| |||||||||  ||||||||||||||||||||  ||||| ||||||||    
T  40423313 ttaacttccgttgaaaaatgtcaagcgtgagttaacatacgctgaattaagagaatgaacaatttcaaaaggga 40423240  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 24672703 - 24672641
Alignment:
Q  20 aaaaatatcgagcttgagttaactcacgctgaattaagagaatgagaaattttaaaagggaga 82  Q
    ||||||||||||| ||||| ||||| |||||| | ||| ||||||| |||||| |||||||||    
T  24672703 aaaaatatcgagcgtgagtaaactcccgctgagtcaagggaatgagcaattttgaaagggaga 24672641  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 7379531 - 7379588
Alignment:
Q  7 ttaacttacgttaaaaaatatcgagcttgagttaactcacgctgaattaagagaatga 64  Q
    |||||||| | | |||||| |||||| ||| ||||||||||||||||||| |||||||    
T  7379531 ttaacttatgctgaaaaatgtcgagcgtgaattaactcacgctgaattaaaagaatga 7379588  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 1944757 - 1944713
Alignment:
Q  18 taaaaaatatcgagcttgagttaactcacgctgaattaagagaat 62  Q
    ||||||||||||| | |||||||| ||||| ||||||||||||||    
T  1944757 taaaaaatatcgaacgtgagttaattcacgttgaattaagagaat 1944713  T

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