View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17158_low_6 (Length: 612)
Name: NF17158_low_6
Description: NF17158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17158_low_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 571; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 571; E-Value: 0
Query Start/End: Original strand, 9 - 595
Target Start/End: Complemental strand, 4117224 - 4116638
Alignment:
| Q |
9 |
acatcatcaatgataatcattttccaatttgaactttaaggttgatgtagaagtgttgtttgagctacctgagctagaaagtggtgactggttagaagat |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4117224 |
acatcatcaatgataatcattttccaatttgaactttaaggttgatgtagaagtgttgtttgagctacctgagctagaaagtggtgactggttagaagat |
4117125 |
T |
|
| Q |
109 |
cctagtgaagttgatcctcaactactatgtagcaaacaacatgcatcaagaagtggcaaaataggaccgtttggtttgttagctttagcttcaaaggatt |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4117124 |
cctagtgaagttgatcctcaactactatgtagcaaacaacatgcatcaagaagtggcaaaataggaccgtttggtttgttagctttagcttcaaaggatt |
4117025 |
T |
|
| Q |
209 |
tgacagagcaaacagcagtgtctttccaaatatttagagcgtcaaatagatatttatgtctgatgtgcagtgaccagagcaggttatttataacattctc |
308 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4117024 |
tgacagaggaaacagcagtgtctttccaaatatttagagcgtcaaatagatatttatgtctgatgtgcagtgaccagagcaggttatttataacattctc |
4116925 |
T |
|
| Q |
309 |
taatttaatttgcattgcataaatttcacttttcaatgagattgagtttgaaccacttatagactatagcgagggattttgattttcggaagtcacgtag |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4116924 |
taatttaatttgcattgcataaatttcacttttcaatgagattgagtttgaacctcttatagactatagcgagggattttgattttcggaagtcacgtag |
4116825 |
T |
|
| Q |
409 |
ttatgaatctcgatcatttgataacgatctggaagtttgtatttgaagatgtgtatttaaaaactgtcggatcttcatgcaatggtcgacatcccttcaa |
508 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
4116824 |
ttatgaatctcgatcatttgataacgatctggaagtttgtatttgaagatgtgtatttaaaaactgtcggatcttcatgcaatggtcgacatcacttcaa |
4116725 |
T |
|
| Q |
509 |
tacgcgcatgtgtgcttttcctgattgcaggaaattctagtatataagctcatgaaactaagttgtgtacattttacaggtcttcat |
595 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4116724 |
tacgcgcatgtgtgcttttcctgattgcaggaaattctagtctataagctcatgaaactaagttgtgtacattttacaggtcttcat |
4116638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 43 - 203
Target Start/End: Complemental strand, 4137048 - 4136891
Alignment:
| Q |
43 |
tttaaggttgatgtagaagtgttgtttgagctacctgagctagaaagtggtgactggttagaagatcctagtgaagttgatcctcaactactatgtagca |
142 |
Q |
| |
|
||||||| |||||| ||||| |||||||||||||| | ||| |||||| ||| | | ||||| || |||||||||||||||||| ||| |||| |
|
|
| T |
4137048 |
tttaaggctgatgtggaagtcttgtttgagctacccaatctacaaagtgctgagttgctagaa---ccaagtgaagttgatcctcaagaactctgtaaag |
4136952 |
T |
|
| Q |
143 |
aacaacatgcatcaagaagtggcaaaataggaccgtttggtttgttagctttagcttcaaa |
203 |
Q |
| |
|
||||| |||||||||||| ||||| |||||||| ||||||||| ||||||||| ||||| |
|
|
| T |
4136951 |
aacaatatgcatcaagaaatggcatgataggaccatttggtttgcaagctttagcatcaaa |
4136891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 46 - 197
Target Start/End: Complemental strand, 4141951 - 4141803
Alignment:
| Q |
46 |
aaggttgatgtagaagtgttgtttgagctacctgagctagaaagtggtgactggttagaagatcctagtgaagttgatcctcaactactatgtagcaaac |
145 |
Q |
| |
|
|||| |||||| ||||| ||||||||||||||||| |||||||||| ||| | ||||| || |||||||||||||||||| ||| |||| ||| |
|
|
| T |
4141951 |
aaggctgatgtggaagtcttgtttgagctacctgatctagaaagtgctgaggtgctagaa---ccaagtgaagttgatcctcaagaactctgtaaagaac |
4141855 |
T |
|
| Q |
146 |
aacatgcatcaagaagtggcaaaataggaccgtttggtttgttagctttagc |
197 |
Q |
| |
|
|| ||||||||| || |||| ||||| || ||||||||| ||||||||| |
|
|
| T |
4141854 |
aatatgcatcaataaaaggcatgatagggccatttggtttgcaagctttagc |
4141803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University