View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17158_low_60 (Length: 238)
Name: NF17158_low_60
Description: NF17158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17158_low_60 |
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| [»] chr2 (2 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 2692058 - 2692278
Alignment:
| Q |
18 |
ttaaggaaccctttgaagcaccttacctaaatcagaatgatcaagacgaatatgcaatgtatttccatcgccacgttcaaactgttgaacatcaaccaaa |
117 |
Q |
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| T |
2692058 |
ttaaggaaccctttgaagcaccttacctaaatcagaatgagcaagacgaatatgcaatgtatttccatcaccacgttcaaactgttgaacatcaaccaaa |
2692157 |
T |
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| Q |
118 |
tctccataccaaagcatacaaccaattccaatgacttctgcataagcagtacaagaagtattctccaaacaattaccttcacaatcattagtaacaacca |
217 |
Q |
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| T |
2692158 |
tctccataccaaagcatacaaccaattccaatgacttctgcataagcagtacaagaagtattctccaaacaattaccttcacaatcattagtaacaacca |
2692257 |
T |
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| Q |
218 |
cacgtgcaaagtcaggtaact |
238 |
Q |
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| T |
2692258 |
catgtgcaaagtcaggtaact |
2692278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 40 - 238
Target Start/End: Original strand, 2699779 - 2699977
Alignment:
| Q |
40 |
ttacctaaatcagaatgatcaagacgaatatgcaatgtatttccatcgccacgttcaaactgttgaacatcaaccaaatctccataccaaagcatacaac |
139 |
Q |
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| T |
2699779 |
ttacctaaatcagaataagcgagacgaatgtgcagagcgtttccttctccatgttgaaagtgtagaatatcaaccaaatctccataccaaaccatacaac |
2699878 |
T |
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| Q |
140 |
caattccaatgacttctgcataagcagtacaagaagtattctccaaacaattaccttcacaatcattagtaacaaccacacgtgcaaagtcaggtaact |
238 |
Q |
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| T |
2699879 |
caattccaataacttctgcataagcagtacaagaaccattctgtaaacaattacctttacaatctttcgtatcaaccacacgcgcaaaatcaggtaact |
2699977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 119; Significance: 6e-61; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 20 - 238
Target Start/End: Original strand, 14521134 - 14521352
Alignment:
| Q |
20 |
aaggaaccctttgaagcaccttacctaaatcagaatgatcaagacgaatatgcaatgtatttccatcgccacgttcaaactgttgaacatcaaccaaatc |
119 |
Q |
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| T |
14521134 |
aaggaaccctttgatgtatcttacctaaatcagactgagcaagacgaatatataacgaatttccttcatcgcgtcctaagtgttgaacatcgaccaaatc |
14521233 |
T |
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| Q |
120 |
tccataccaaagcatacaaccaattccaatgacttctgcataagcagtacaagaagtattctccaaacaattaccttcacaatcattagtaacaaccaca |
219 |
Q |
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| T |
14521234 |
tccatgccaaaccatacaaccaattccagttacttctgcataagcagtacaagaagcattctccaaacaattaccttcacaatccttagtatcaaccaca |
14521333 |
T |
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| Q |
220 |
cgtgcaaagtcaggtaact |
238 |
Q |
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| T |
14521334 |
cgtgcaaagtcgggtaact |
14521352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 203
Target Start/End: Complemental strand, 36289336 - 36289235
Alignment:
| Q |
102 |
ttgaacatcaaccaaatctccataccaaagcatacaaccaattccaatgacttctgcataagcagtacaagaagtattctccaaacaattaccttcacaa |
201 |
Q |
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||||| |||||| || || |||| ||||| |||||| ||||||||||| | | | |||| |||||||||||| |||||| || |||||| ||||||||| |
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| T |
36289336 |
ttgaaaatcaactaactccccatgccaaaccatacacccaattccaatagcatttacataggcagtacaagaactattcttcagacaatttccttcacaa |
36289237 |
T |
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| Q |
202 |
tc |
203 |
Q |
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|| |
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| T |
36289236 |
tc |
36289235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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