View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17158_low_61 (Length: 237)
Name: NF17158_low_61
Description: NF17158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17158_low_61 |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 42677335 - 42677514
Alignment:
| Q |
1 |
atactatgcacaattatttgctttgtgaacacatatatactacatgttttcgtggtaccttcagaacatgttcacgccatgtttgttttttaagtgtttg |
100 |
Q |
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| T |
42677335 |
atactatgcacaattatttgctttttgaacacatatatactacatgttttcgtggtaccttcagaacatgttcacgccatgtttgttttttaagtgtttg |
42677434 |
T |
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| Q |
101 |
taccgattctattatgaaccacgctagccatcaattgaaaaatattgtaaggggaggttaattcatacagctttgtctaa |
180 |
Q |
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| T |
42677435 |
taccgattctattgtgaaccacgctagccatcaattgaaaaatattgtaaggggaggttaattcatacagctttgtctaa |
42677514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 197 - 230
Target Start/End: Original strand, 42677520 - 42677553
Alignment:
| Q |
197 |
atgtgacggtgagttttgtttgtggtgatgatgt |
230 |
Q |
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| T |
42677520 |
atgtgacggtgagttttgtttgtggtgatgatgt |
42677553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 48968874 - 48968805
Alignment:
| Q |
1 |
atactatgcacaattatttgctttgtgaacacatatatactacatgttttcgtggtaccttcagaacatgttca |
74 |
Q |
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| T |
48968874 |
atactatgcacaattatttgctttttgaacac----ctactacaggtttttgtggtaccttcagaacatgttca |
48968805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 197 - 230
Target Start/End: Complemental strand, 15496130 - 15496097
Alignment:
| Q |
197 |
atgtgacggtgagttttgtttgtggtgatgatgt |
230 |
Q |
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| T |
15496130 |
atgtggcggtgagttttgtttgtggtgatgatgt |
15496097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 197 - 230
Target Start/End: Complemental strand, 6705752 - 6705719
Alignment:
| Q |
197 |
atgtgacggtgagttttgtttgtggtgatgatgt |
230 |
Q |
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| T |
6705752 |
atgtggcggtgagttttgtttgtggtgatgatgt |
6705719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 197 - 230
Target Start/End: Complemental strand, 40900436 - 40900403
Alignment:
| Q |
197 |
atgtgacggtgagttttgtttgtggtgatgatgt |
230 |
Q |
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||||| |||||||||||||||||||||||||||| |
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| T |
40900436 |
atgtggcggtgagttttgtttgtggtgatgatgt |
40900403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 169
Target Start/End: Complemental strand, 40900512 - 40900464
Alignment:
| Q |
121 |
acgctagccatcaattgaaaaatattgtaaggggaggttaattcataca |
169 |
Q |
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| T |
40900512 |
acgctagccatcaattgggaaatattgcaaagggaggttcattcataca |
40900464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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