View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17158_low_8 (Length: 586)
Name: NF17158_low_8
Description: NF17158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17158_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 485; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 17 - 577
Target Start/End: Complemental strand, 34478666 - 34478099
Alignment:
| Q |
17 |
aataacttcttcttgacaattcatttttccctcaggtacccaattatatttcattctaacctctacctgaaagcttgtattgtcatgtttgttcaaactt |
116 |
Q |
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| T |
34478666 |
aataacttcttcttgacaattcatttttccctcaggtacccaattatatttcattctaacctctacctgaaagcttgtattgtcatgtttgttcaaactt |
34478567 |
T |
|
| Q |
117 |
aatctggtttacccaaaaaccaaaactatatctgttcctcacccaatttcaactttccattaaatctactataattccctctctcatctccacagcacat |
216 |
Q |
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|| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |
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| T |
34478566 |
aaactggtttacccaaaaaccaaaactatatttgttcctcacccaatttcaactttccattaaatctactataattccctttctcatctccacaacacat |
34478467 |
T |
|
| Q |
217 |
gcattttatagaaacactaatatagacacggataaccgacac-----------atgatagatatccgtaataatttaagcaaatgaaagtgatttgatgt |
305 |
Q |
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| T |
34478466 |
gcattttatagaaacactaatataaacacggataaccgacacgatattgacacatgatagatatccgtaataatttaagcaaatgaaagtgatttgatgt |
34478367 |
T |
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| Q |
306 |
aaccacatatcaccttcaatatgaagtgccggtgctgcatatgtttactttttacgcaagaatctgctattttaattaatcataacttttcaaatataat |
405 |
Q |
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| T |
34478366 |
aaccacataccaccttcaatatgaagtgccggtgctgcatatgtttactttttacgcaagaatccgctattttaat----cataacttttcaaatataat |
34478271 |
T |
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| Q |
406 |
atattgataaaattctaaaccaatcttacaattagaatgaaattataaaactgacaacaaaaagaaggaacaaaacataccttttgatgagtggaagcca |
505 |
Q |
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| T |
34478270 |
atattgataaaattctaaaccaatcttacaattagaatgaaattataaaactgacaacaaaaagaaggaacaaaacataccttttgatgagtggaagcca |
34478171 |
T |
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| Q |
506 |
caagaccacgtaatgttccaaggtgaccatttattctctcccttcttctcctctctgcttccctatgcttct |
577 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
34478170 |
caagaccacgtaatgttccaaggtgaccatttattctctcccttcttctcctctctgcttccctatgattct |
34478099 |
T |
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