View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17159_high_1 (Length: 218)
Name: NF17159_high_1
Description: NF17159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17159_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 128; Significance: 2e-66; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 14 - 149
Target Start/End: Original strand, 13942748 - 13942883
Alignment:
| Q |
14 |
caaaggcaagaggtgtgattgaggatcaacaagttgatgactctgcatatcaagaggattttctggatcaaaatatagttggcatctcagctgacataga |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
13942748 |
caaaggcaagaggtgtgattgaggatcaacaagttgatgactctgcatatcaagaggattttctggatcaaaatatggttggcatctcagctgacataga |
13942847 |
T |
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| Q |
114 |
ttttcctgcgactttactagatgttgagggaagatt |
149 |
Q |
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| T |
13942848 |
tttgcctgcgactttactagatgttgagggaagatt |
13942883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 128; Significance: 2e-66; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 14 - 149
Target Start/End: Complemental strand, 15254549 - 15254414
Alignment:
| Q |
14 |
caaaggcaagaggtgtgattgaggatcaacaagttgatgactctgcatatcaagaggattttctggatcaaaatatagttggcatctcagctgacataga |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
15254549 |
caaaggcaagaggtgtgattgaggatcaacaagttgatgactctgcatatcaagaggattttctggatcaaaatatggttggcatctcagctgacataga |
15254450 |
T |
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| Q |
114 |
ttttcctgcgactttactagatgttgagggaagatt |
149 |
Q |
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| T |
15254449 |
tttgcctgcgactttactagatgttgagggaagatt |
15254414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 14 - 149
Target Start/End: Original strand, 15719793 - 15719928
Alignment:
| Q |
14 |
caaaggcaagaggtgtgattgaggatcaacaagttgatgactctgcatatcaagaggattttctggatcaaaatatagttggcatctcagctgacataga |
113 |
Q |
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| T |
15719793 |
caaaggcaagaggtgtgattgaggatcaacaagttgatgactctgcatatcaagaggattttctggatcaaaatatggttggcatctcagctgacataga |
15719892 |
T |
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| Q |
114 |
ttttcctgcgactttactagatgttgagggaagatt |
149 |
Q |
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||| ||||||| |||||||||||||||||||||||| |
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| T |
15719893 |
tttgcctgcgaatttactagatgttgagggaagatt |
15719928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 149
Target Start/End: Complemental strand, 15215233 - 15215195
Alignment:
| Q |
111 |
agattttcctgcgactttactagatgttgagggaagatt |
149 |
Q |
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|||||| |||| ||||||||||||||||||||||||||| |
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| T |
15215233 |
agatttgcctgtgactttactagatgttgagggaagatt |
15215195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 14 - 149
Target Start/End: Original strand, 17002881 - 17003016
Alignment:
| Q |
14 |
caaaggcaagaggtgtgattgaggatcaacaagttgatgactctgcatatcaagaggattttctggatcaaaatatagttggcatctcagctgacataga |
113 |
Q |
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||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
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| T |
17002881 |
caaaggcaagaggtgtgatcgaggatcaacaagttgaagactctgcatatcaagaggattttctggatcaaaatattgctggcatctcagctgacataga |
17002980 |
T |
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| Q |
114 |
ttttcctgcgactttactagatgttgagggaagatt |
149 |
Q |
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||| |||||||||||||||||||||||||||||||| |
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| T |
17002981 |
tttgcctgcgactttactagatgttgagggaagatt |
17003016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 14 - 149
Target Start/End: Original strand, 21574675 - 21574810
Alignment:
| Q |
14 |
caaaggcaagaggtgtgattgaggatcaacaagttgatgactctgcatatcaagaggattttctggatcaaaatatagttggcatctcagctgacataga |
113 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
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| T |
21574675 |
caaaggcaagaggtgtgatcgaggatcaacaagttgatgactctgcatatcaagaggattttctggatcaaaatatggctggcatctcagctgacataga |
21574774 |
T |
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| Q |
114 |
ttttcctgcgactttactagatgttgagggaagatt |
149 |
Q |
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||| ||||| |||||||||||||||||||||||||| |
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| T |
21574775 |
tttgcctgcaactttactagatgttgagggaagatt |
21574810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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