View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17159_high_10 (Length: 332)
Name: NF17159_high_10
Description: NF17159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17159_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 21346134 - 21345806
Alignment:
| Q |
1 |
aaggatttaggtttagaaagtttgaatctgtttcacttttttgcattgtgcagatgacaaagtaactgttttggagtcagaaaagcgcgccttggagaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21346134 |
aaggatttaggtttagaaagtttgaatctgtttcacttttttgcattgtgcagatgacaaagtaactgttttggagtcagaaaagcgcgccttggagaat |
21346035 |
T |
|
| Q |
101 |
tctccagaagctcaagcaattagagaagctctcaacccttggagacatgttgatacaaaagaaacaaacaagccctaacgcgagtatgaaccattttatt |
200 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21346034 |
tctccagatgctcaagcaattagagaagctctcaacccttggagacatgttgatacaaaagaaacaaacaagccctaacgcgagtatgaaccattttatt |
21345935 |
T |
|
| Q |
201 |
aaaatccatgaatgatacgtcaagaattttaccgagaatacgctggaagttgattgcatatggactgcttttctgttatactttatgattcatgtggtgg |
300 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21345934 |
aaaatccatgaatgatgcgtcaagaattttaccgagaatacgctggaagttgattgcatatggactgcttttctgttatactttatgattcatgtggtgg |
21345835 |
T |
|
| Q |
301 |
aattgatgatgtccatctcattgcggcatc |
330 |
Q |
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|||||||| || || || |||||||||||| |
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| T |
21345834 |
aattgatggtgcccttc-cattgcggcatc |
21345806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 22864 - 22558
Alignment:
| Q |
1 |
aaggatttaggtttagaaagtttgaatctgtttcacttttttgcattgtgcagatgacaaagtaactgttttggagtcagaaaagcgcgccttggagaat |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22864 |
aaggatttaggtttagaaagtttgaatctgtttcacttttttgcattgtgcagatgacaaagtaactgttttggagtcagaaaagcgcgccttggagaat |
22765 |
T |
|
| Q |
101 |
tctccagaagctcaagcaattagagaagctctcaacccttggagacatgttgatacaaaagaaacaaacaagccctaacgcgagtatgaaccattttatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
22764 |
tctccagaagctcaagcaattagagaagctctcaacccttggagacatgttgatacaaaagaaacaaacaagccctgacgcgagtatgaaccattttatt |
22665 |
T |
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| Q |
201 |
aaaatccatgaatgatacgtcaagaattttaccgagaatacgctggaagttgattgcatatggactgcttttctgttatactttatgattcatgtggtgg |
300 |
Q |
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|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
22664 |
aaaatccatgaatgattcgtcaagaattttacagagaatacgctggaagttgattgcatatggactgcttttctgttatac-ttatgattcatgtggtgg |
22566 |
T |
|
| Q |
301 |
aattgatg |
308 |
Q |
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|||||||| |
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| T |
22565 |
aattgatg |
22558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 29381208 - 29380906
Alignment:
| Q |
1 |
aaggatttaggtttagaaagtttgaatctgtttcacttttttgcattgtgcagatgacaaagtaactgttttggagtcagaaaagcgcgccttggagaat |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
29381208 |
aaggatttaggtttacaaagtttgaatctgtttcacttttttgcattgtgcagatgataaagtaactgttttggagtcagaaaagcgcgccttggagaat |
29381109 |
T |
|
| Q |
101 |
tctccagaagctcaagcaattagagaagctctcaacccttggagacatgttgatacaaaagaaacaaacaagccctaacgcgagtatgaaccattttatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||| |
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| T |
29381108 |
tctccagaagctcaagcaattagagaagctctcaacccttggagacatgttgatacaaaagaaacaaacaagccctgacgtgagtatgagccattttatt |
29381009 |
T |
|
| Q |
201 |
aaaatccatgaatgatacgtcaagaattttaccgagaatacgctggaagttgattgcatatggactgcttttctgttatactttatgattcatgtggtgg |
300 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||| |
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| T |
29381008 |
aaaatccatgaatgatttgtcaagaattttaccgagaatacgctggaagtcgattgcatatggactgcttttctgttatac-ttatgattcatgtcatgg |
29380910 |
T |
|
| Q |
301 |
aatt |
304 |
Q |
| |
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|||| |
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|
| T |
29380909 |
aatt |
29380906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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