View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17159_high_14 (Length: 321)
Name: NF17159_high_14
Description: NF17159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17159_high_14 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 40547426 - 40547118
Alignment:
| Q |
1 |
ataccaaccctcttatatcataagccatattcacattcatgatctgactatcatacatccataacatggttaacaaaaacattatcacatatggaaaaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40547426 |
ataccaaccctcttatatcataagccatattcacattcatgatctgactatcatacatccataacatggttaacaaaaacattatcacatatggaaaaca |
40547327 |
T |
|
| Q |
101 |
attgaacctgtctctgttcataaaatttagactctagtaaaaaggaaaaaccttgtgagctttaaagattctaataggcagaagaatatatagacatata |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
40547326 |
attgaacctgtctctgttcataaaatttagactctagtaaaaaggaaaaaccttgtgagctctaaagattctaataggcacaagaatatatagacatata |
40547227 |
T |
|
| Q |
201 |
taaaaggaaacagc----atagcttcataaaataatgaattcaaacatgactggagttgtcatctttatacattgttatcactcaagttgtgtatttgag |
296 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
40547226 |
taaaaggaaacagcatatatagcttcataaaataatgaattcaaacatgactggagttgtcatctttatacattgtcatcactcaagttgtgtatttgag |
40547127 |
T |
|
| Q |
297 |
tttcttcat |
305 |
Q |
| |
|
||||||||| |
|
|
| T |
40547126 |
tttcttcat |
40547118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University