View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17159_high_17 (Length: 316)

Name: NF17159_high_17
Description: NF17159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17159_high_17
NF17159_high_17
[»] chr7 (1 HSPs)
chr7 (23-316)||(34335442-34335734)


Alignment Details
Target: chr7 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 23 - 316
Target Start/End: Complemental strand, 34335734 - 34335442
Alignment:
Q  23 atcatcactacctgctcaaattcaagttnnnnnnnntgtaatttctccaaaaccaatcatataacatttgtgttcgttgagttcgattttgattcggatt 122  Q
    ||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34335734 atcatcactacctgctcaaattcaagttaaaaaaaatgtaatttctccaaaaccaatcatataacatttgtgttcgttgagttcgattttgattcggatt 34335635  T
Q  123 aagatacaacttgcatgtatcatgtgatacctaacatttcaagaatgaaattactcacatgcagctaactctatttgtgtctggtagataaattccaaaa 222  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  34335634 aagatacaacttgcatgtatcatgtgatacctaacatt-caagaatggaattactcacatgcagctaactctatttgcgtctggtagataaattccaaaa 34335536  T
Q  223 ctgctgaaatatctttctcaaacttaagaaacggtccattagggaactccatctttctcagtttacatagtccctcccctaactccatcatagc 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34335535 ctgctgaaatatctttctcaaacttaagaaacggtccattagggaactccatctttctcagtttacatagtccctcccctaactccatcatagc 34335442  T

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