View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17159_high_2 (Length: 469)
Name: NF17159_high_2
Description: NF17159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17159_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 14 - 440
Target Start/End: Complemental strand, 10194538 - 10194107
Alignment:
| Q |
14 |
gaacctgtgcttttgctgattagctttagtggatttaaacggtgttttaatcaaaagctattgtattgagatgagcagtgctggacaatgagatggacat |
113 |
Q |
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| T |
10194538 |
gaacctgtgattttgctgattagctttagtggatttaaacggtgttttaatcaaaagctattgtattgagatgagctgtgctggcttgagttttggaaac |
10194439 |
T |
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| Q |
114 |
cat-cattcgattttgaataagtaacgcatttaaagataaatatgatgaaagacaagcgaagtgcaaaagatccgatcactacttatacggtttagggtt |
212 |
Q |
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| T |
10194438 |
aaagcattctattttgaataagtaacgcatttaaagataaatatgatgaaagacaagcgaagtgcaaaagatccgatcactacttatacggtttagggtt |
10194339 |
T |
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| Q |
213 |
ttct---------tgtcaattataatttgcgatttatgatcaaacactgttaggcggcatgttcagtaacagatgagttcgaattccttgatcctgatat |
303 |
Q |
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| T |
10194338 |
ttctggtttttcttgtcaattataatttgcgatttatgatcaaacactgttaggctgcatgttcagtaacagatgagttcgaattccttgatcctgatat |
10194239 |
T |
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| Q |
304 |
caggatgcctggaatggtgttagggacagaaaattttgataagttccatgttgcagtgaatgcaattgatgcgatgcagtttatgacaaattgcaatacc |
403 |
Q |
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| T |
10194238 |
caggatgcctggaatggtgttagggacagaaaattttgataagttccatgttgcagtgaatgcaattgattc-----agtttatgacaaattgcaatacc |
10194144 |
T |
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| Q |
404 |
agattatgtactactggtataaggttatagaacacat |
440 |
Q |
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| T |
10194143 |
agattatgtactactggtataaggttatagaacacat |
10194107 |
T |
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Target: chr1 (Bit Score: 64; Significance: 8e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 14 - 97
Target Start/End: Original strand, 19459169 - 19459252
Alignment:
| Q |
14 |
gaacctgtgcttttgctgattagctttagtggatttaaacggtgttttaatcaaaagctattgtattgagatgagcagtgctgg |
97 |
Q |
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| T |
19459169 |
gaacctgtgattttgctgattagcttcagtggatttaaaccgtattttaatcaaaagctattgtattgagatgagctgtgctgg |
19459252 |
T |
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