View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17159_high_4 (Length: 402)

Name: NF17159_high_4
Description: NF17159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17159_high_4
NF17159_high_4
[»] chr1 (2 HSPs)
chr1 (22-373)||(11780115-11780467)
chr1 (43-215)||(10424593-10424765)
[»] chr7 (1 HSPs)
chr7 (31-373)||(17158540-17158886)
[»] chr6 (4 HSPs)
chr6 (25-366)||(14977470-14977814)
chr6 (158-329)||(11776308-11776482)
chr6 (158-214)||(9352421-9352477)
chr6 (158-206)||(24353638-24353686)
[»] chr2 (1 HSPs)
chr2 (25-346)||(12101751-12102070)
[»] chr5 (4 HSPs)
chr5 (30-329)||(5781889-5782191)
chr5 (43-329)||(19069420-19069709)
chr5 (158-215)||(11724701-11724758)
chr5 (55-152)||(17763963-17764060)
[»] chr3 (4 HSPs)
chr3 (48-215)||(16311632-16311799)
chr3 (48-215)||(18488416-18488583)
chr3 (48-215)||(18492626-18492793)
chr3 (63-226)||(19829018-19829181)
[»] chr8 (1 HSPs)
chr8 (102-215)||(17459431-17459544)


Alignment Details
Target: chr1 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 22 - 373
Target Start/End: Original strand, 11780115 - 11780467
Alignment:
22 acatcatcatgctcaacaattgatgaatgtggtacatgctcatgggcacccttcggactctccaccagaccctgtaggcgcgaatgattatgttccacat 121  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||||||||||||||    
11780115 acatcatcgtgctcaacaattgatgaatgtggtacatgctcatgggcacccttcggactctccaccagctcctgtgggcgcgaatgattatgttccacat 11780214  T
122 catccgagagcgttggagtaacatcgtcaactacatggttctccaactcctcccgcgatgtcggatgcgactgctccactctctcagaatgcacttcatc 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
11780215 catccgagagcgttggagtaacatcgtcaactacatggttctccaactcctcccgcgatgtcggatgcgactgcttcactctctcagaatgcatttcatc 11780314  T
222 atgcaa-ccgggaaacaatttcaaacactggcgtagctagtagcagctcctcactagaaatgttgtcaaacacgttatgcagtggaaagctgaaagatgt 320  Q
    |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||||    
11780315 atgcaatcggggaaacaatttcaaacactggcgtagctagtagcagctcctcactagaaacgctgtcaaacacgttatgtagtggaaagctgaaagatgt 11780414  T
321 tgacgacaatgatgtcctaggcatagggaccgtcatatgagaagtaacaactg 373  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||    
11780415 tgacgacaatgatgtcctgggcatagggaccgtcatatgagaagtaacaactg 11780467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 43 - 215
Target Start/End: Original strand, 10424593 - 10424765
Alignment:
43 gatgaatgtggtacatgctcatgggcacccttcggactctccaccagaccctgtaggcgcgaatgattatgttccacatcatccgagagcgttggagtaa 142  Q
    ||||||||||||||| |||| | || |||||| ||||||||||||||  || || |||||||| |||||| |||||||||||| || |||||   ||  |    
10424593 gatgaatgtggtacacgctcgtaggaacccttaggactctccaccagctcccgtgggcgcgaacgattatattccacatcatcagaaagcgtaacagaga 10424692  T
143 catcgtcaactacatggttctccaactcctcccgcgatgtcggatgcgactgctccactctctcagaatgcac 215  Q
    |||| || || ||  ||||||||||  |||||||||||||| ||||| | || ||||||||||||||||||||    
10424693 catcatccaccacggggttctccaatacctcccgcgatgtcagatgcaattgttccactctctcagaatgcac 10424765  T

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Target: chr7 (Bit Score: 181; Significance: 1e-97; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 31 - 373
Target Start/End: Original strand, 17158540 - 17158886
Alignment:
31 tgctcaacaattgatgaatgtggtacatgctcatgggcacccttcggactctccaccagaccctgtaggcgcgaatgattatgttccacatcatccgaga 130  Q
    |||| |||||||||||||||| |||||||||||||| | ||||| |||||||||||||    ||   || ||||||||||||| ||||||||||||||||    
17158540 tgcttaacaattgatgaatgtagtacatgctcatggtcccccttgggactctccaccaactactaggggtgcgaatgattatgctccacatcatccgaga 17158639  T
131 gcgttggagtaacatcgtcaactacatggttctccaactcctcccgcgatgtcggatgcgactgctcc-actctctcagaatgcacttcatcatgc---a 226  Q
    | || | ||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||| |||   |    
17158640 gtgtcgcagtaacatcgtcaaccacagggttctccaactcctcccgcgatatcggatgcgactgatcccactctctcagaatgcacttcatcgtgcgcaa 17158739  T
227 accgggaaacaatttcaaacactggcgtagctagtagcagctcctcactagaaatgttgtcaaacacgttatgcagtggaaagctgaaagatgttgacga 326  Q
    ||  ||||||||||||||||||||||||||| ||| ||||||  ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||    
17158740 actaggaaacaatttcaaacactggcgtagcgagtggcagcttttcactagaaatgttgtcaaacacgttatgtagtggaaagctgaaaggtgttgacga 17158839  T
327 caatgatgtcctaggcatagggaccgtcatatgagaagtaacaactg 373  Q
    |||||| ||| | ||||||||||| ||||  ||||||||||||||||    
17158840 caatgacgtcttgggcatagggactgtcaactgagaagtaacaactg 17158886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 106; Significance: 6e-53; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 25 - 366
Target Start/End: Complemental strand, 14977814 - 14977470
Alignment:
25 tcatcatgctcaacaattgatgaatgtggtacatgctcatgggcacccttcggactctccaccagaccctgtaggcgcgaatgattatgttccacatcat 124  Q
    |||||||||| |||||| ||||||||||| ||||||||||||| |||||| ||||||||||||||  || |  ||  |||||||||||||||||||||||    
14977814 tcatcatgctaaacaatggatgaatgtggaacatgctcatgggaacccttgggactctccaccagctcccgcggggtcgaatgattatgttccacatcat 14977715  T
125 ccgagagcgttggagtaacatcgtcaactacatggttctccaactcctcccgcgatgtcggatgcgactgctccactctctcagaatgcacttcatcat- 223  Q
      || ||||| | |||||||||||||||     || ||| || ||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |     
14977714 aagatagcgtagcagtaacatcgtcaaccgttgggatctgcacctcctcccgcgatgtcggatgcgactgctccactctctcggaatgcacgtcatcgtg 14977615  T
224 -gcaac-cgggaaacaatttcaaacactggcgtagctagtagcagctcctcactagaaatgttgtcaaacacgttatgcagtggaaagctgaaagatgtt 321  Q
     |||||  |||| ||||  |||| |||||| ||||||  | ||| || ||||||||||||  | ||||||| ||| || | ||| ||||| |||||||||    
14977614 cgcaactggggacacaaactcaatcactggtgtagcttctggcaacttctcactagaaatactatcaaacatgttgtgtaatgggaagctaaaagatgtt 14977515  T
322 gacgacaatgatgtcctaggcatagggaccgtcatatgagaagta 366  Q
    || ||||| || ||||| |||| ||||||| |||| |||||||||    
14977514 gatgacaaagacgtcctgggcacagggaccatcatctgagaagta 14977470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 158 - 329
Target Start/End: Original strand, 11776308 - 11776482
Alignment:
158 ggttctccaactcctcccgcgatgtcggatgcgactgctccactctctcagaatgcacttcatcatg--caac-cgggaaacaatttcaaacactggcgt 254  Q
    |||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||| ||||| ||  ||||  |||||||||  || |||||||| ||    
11776308 ggttctccaactcctcccgcgatgactgatgcaactgctccactctctcagaatgcacatcatcgtgcacaacaggggaaacaacctctaacactggtgt 11776407  T
255 agctagtagcagctcctcactagaaatgttgtcaaacacgttatgcagtggaaagctgaaagatgttgacgacaa 329  Q
    | |  || ||| |||||||  |||||| ||||||||| | ||||| | |||||||||||||||  ||||||||||    
11776408 aacatgtggcaactcctcatgagaaattttgtcaaacgcattatgtaatggaaagctgaaagagtttgacgacaa 11776482  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 214
Target Start/End: Original strand, 9352421 - 9352477
Alignment:
158 ggttctccaactcctcccgcgatgtcggatgcgactgctccactctctcagaatgca 214  Q
    ||||||||||| |||| ||||||||| || || |||| |||||||||||||||||||    
9352421 ggttctccaacacctctcgcgatgtcagacgcaactgttccactctctcagaatgca 9352477  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 206
Target Start/End: Original strand, 24353638 - 24353686
Alignment:
158 ggttctccaactcctcccgcgatgtcggatgcgactgctccactctctc 206  Q
    |||||||||||||||||||||||||| ||||| |||||| | |||||||    
24353638 ggttctccaactcctcccgcgatgtctgatgcaactgcttcgctctctc 24353686  T

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Target: chr2 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 25 - 346
Target Start/End: Complemental strand, 12102070 - 12101751
Alignment:
25 tcatcatgctcaacaattgatgaatgtggtacatgctcatgggcacccttcggactctccaccagaccctgtaggcgcgaatgattat----gttccaca 120  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||  || |  |||||||||||||||    ||||||||    
12102070 tcatcgtgctcaacaattgatgaatgtggtacatgctcataggcacccttgggactctccaccagctcccgggggcgcgaatgattatatatgttccaca 12101971  T
121 tcatccgagagcgttggagtaacatcgtcaactacatggttctccaactcctcccgcgatgtcggatgcgactgctccactctctcagaatgcacttcat 220  Q
    |         |  | | ||||||||||||| | |   ||||||||||||||||||||||||||| ||| |  |||||| ||||||||| |||||| ||||    
12101970 t---------gtatcgtagtaacatcgtcagccatggggttctccaactcctcccgcgatgtcgaatgtgtttgctccgctctctcaggatgcacgtcat 12101880  T
221 catgcaacc---gggaaacaatttcaaacactggcgtagctagtagcagctcctcactagaaatgttgtcaaacacgttatgcagtggaaagctgaaaga 317  Q
    | ||||      |||||| ||||||||||||| | || ||| || | |||||||| |||||||| |||| |||||||||||| |||||||||||||||||    
12101879 cgtgcacaattggggaaataatttcaaacactcgtgttgcttgtggtagctcctcgctagaaatattgttaaacacgttatgtagtggaaagctgaaaga 12101780  T
318 tgttgacgacaatgatgtcctaggcatag 346  Q
    ||||||||||||||| ||| |||||||||    
12101779 tgttgacgacaatgacgtcataggcatag 12101751  T

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Target: chr5 (Bit Score: 64; Significance: 7e-28; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 30 - 329
Target Start/End: Original strand, 5781889 - 5782191
Alignment:
30 atgctcaacaattgatgaatgtggtacatgctcatgggcacccttcggactctccaccagaccctgtaggcgcgaatgattatgttccacatcatccgag 129  Q
    |||||||| ||  |||||| ||| |||| ||||||||| |||||| ||||||||||||||  || |  ||  ||||||||| |||||||||||||| ||     
5781889 atgctcaataagggatgaacgtgatacacgctcatgggaacccttgggactctccaccagctcccgcgggatcgaatgattgtgttccacatcatcagaa 5781988  T
130 agcgttggagtaacatcgtcaactacatggttctccaactcctcccgcgatgtcggatgcgactgctccactctctcagaatgcacttcatcat--gcaa 227  Q
    || ||   ||||||||| || ||    |||||||||||||||| |||||||||| ||||| |||||||| |||||||||||||||| ||||| |  ||||    
5781989 agtgtaacagtaacatcatccaccgtgtggttctccaactccttccgcgatgtctgatgcaactgctcctctctctcagaatgcacgtcatcgtgcgcaa 5782088  T
228 c-cgggaaacaatttcaaacactggcgtagctagtagcagctcctcactagaaatgttgtcaaacacgttatgcagtggaaagctgaaagatgttgacga 326  Q
    |  |||||||||  || ||||||||||||||   | |||||||||||  ||||||  | |  ||||| || || | |||||||||||||||  |||||||    
5782089 caagggaaacaacctctaacactggcgtagcacatggcagctcctcaggagaaattctattgaacacattgtgtaatggaaagctgaaagagtttgacga 5782188  T
327 caa 329  Q
    |||    
5782189 caa 5782191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 43 - 329
Target Start/End: Original strand, 19069420 - 19069709
Alignment:
43 gatgaatgtggtacatgctcatgggcacccttcggactctccaccagaccctgtaggcgcgaatgattatgttccacatcatccgagagcgttggagtaa 142  Q
    |||||||||| || | ||||||||  |||||| ||||||||||||||  ||||  ||  ||||||||| |||||||||||||  || || ||   |||||    
19069420 gatgaatgtgatatacgctcatggaaacccttgggactctccaccagctcctgcgggatcgaatgattgtgttccacatcattagaaagggtaacagtaa 19069519  T
143 catcgtcaactacatggttctccaactcctcccgcgatgtcggatgcgactgctccactctctcagaatgcacttcatcat--gcaac-cgggaaacaat 239  Q
    |||| || ||     |||||||||||||||| ||||||||| ||||| || ||||| |||||||||||||||| ||||| |  |||||  |||||| ||     
19069520 catcttccaccgtggggttctccaactcctctcgcgatgtctgatgcaaccgctcctctctctcagaatgcacgtcatcgtgcgcaacaggggaaataac 19069619  T
240 ttcaaacactggcgtagctagtagcagctcctcactagaaatgttgtcaaacacgttatgcagtggaaagctgaaagatgttgacgacaa 329  Q
     || ||||||||||||||  || ||||||||| |  |||||| ||||||||| | || || | |||||||||||||||  ||||||||||    
19069620 ctctaacactggcgtagcacgtggcagctccttaggagaaattttgtcaaacgcattgtgtaatggaaagctgaaagagtttgacgacaa 19069709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 215
Target Start/End: Complemental strand, 11724758 - 11724701
Alignment:
158 ggttctccaactcctcccgcgatgtcggatgcgactgctccactctctcagaatgcac 215  Q
    ||||||||||| |||||||||||||| ||||| | |||||  |||||| |||||||||    
11724758 ggttctccaacacctcccgcgatgtcagatgcaattgctctgctctcttagaatgcac 11724701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 152
Target Start/End: Complemental strand, 17764060 - 17763963
Alignment:
55 acatgctcatgggcacccttcggactctccaccagaccctgtaggcgcgaatgattatgttccacatcatccgagagcgttggagtaacatcgtcaac 152  Q
    ||||||||||||| ||||||  |||||||||||||  || |   ||   |||||||||||||||||||||| || ||||| | ||||||||| |||||    
17764060 acatgctcatgggaacccttgagactctccaccagctcccgccagcttaaatgattatgttccacatcatcagaaagcgtagcagtaacatcatcaac 17763963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 48 - 215
Target Start/End: Complemental strand, 16311799 - 16311632
Alignment:
48 atgtggtacatgctcatgggcacccttcggactctccaccagaccctgtaggcgcgaatgattatgttccacatcatccgagagcgttggagtaacatcg 147  Q
    ||||| |||| |||| | || |||||| ||||||||||||||  || || |||||||| |||||| |||||||||||| || |||||   ||  |||||     
16311799 atgtgatacacgctcgtaggaacccttgggactctccaccagctcccgtgggcgcgaacgattatattccacatcatcagaaagcgtaacagagacatca 16311700  T
148 tcaactacatggttctccaactcctcccgcgatgtcggatgcgactgctccactctctcagaatgcac 215  Q
    || || ||  ||||||||||| |||||||||||||| ||||| | || |||||| ||||| |||||||    
16311699 tccaccacggggttctccaacacctcccgcgatgtcagatgcaattgttccactttctcaaaatgcac 16311632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 48 - 215
Target Start/End: Complemental strand, 18488583 - 18488416
Alignment:
48 atgtggtacatgctcatgggcacccttcggactctccaccagaccctgtaggcgcgaatgattatgttccacatcatccgagagcgttggagtaacatcg 147  Q
    ||||| |||| |||| | || |||||| ||||||||||||||  || || |||||||| |||||| |||||||||||| || |||||   ||  |||||     
18488583 atgtgatacacgctcgtaggaacccttgggactctccaccagctcccgtgggcgcgaacgattatattccacatcatcagaaagcgtaacagagacatca 18488484  T
148 tcaactacatggttctccaactcctcccgcgatgtcggatgcgactgctccactctctcagaatgcac 215  Q
    || || ||  ||||||||||| |||||||||||||| ||||| | || |||||| ||||| |||||||    
18488483 tccaccacggggttctccaacacctcccgcgatgtcagatgcaattgttccactttctcaaaatgcac 18488416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 48 - 215
Target Start/End: Complemental strand, 18492793 - 18492626
Alignment:
48 atgtggtacatgctcatgggcacccttcggactctccaccagaccctgtaggcgcgaatgattatgttccacatcatccgagagcgttggagtaacatcg 147  Q
    ||||| |||| |||| | || |||||| ||||||||||||||  || || |||||||| |||||| |||||||||||| || |||||   ||  |||||     
18492793 atgtgatacacgctcgtaggaacccttgggactctccaccagctcccgtgggcgcgaacgattatattccacatcatcagaaagcgtaacagagacatca 18492694  T
148 tcaactacatggttctccaactcctcccgcgatgtcggatgcgactgctccactctctcagaatgcac 215  Q
    || || ||  ||||||||||| |||||||||||||| ||||| | || |||||| ||||| |||||||    
18492693 tccaccacggggttctccaacacctcccgcgatgtcagatgcaattgttccactttctcaaaatgcac 18492626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 63 - 226
Target Start/End: Original strand, 19829018 - 19829181
Alignment:
63 atgggcacccttcggactctccaccagaccctgtaggcgcgaatgattatgttccacatcatccgagagcgttggagtaacatcgtcaactacatggttc 162  Q
    ||||| |||||| ||||||||||||||  || |  ||  ||||||||| |||||||||||||| || || ||   |||||||||||  |||    |||||    
19829018 atgggaacccttgggactctccaccagctcccgcgggttcgaatgattgtgttccacatcatcagaaagtgtaacagtaacatcgttcactgtggggttc 19829117  T
163 tccaactcctcccgcgatgtcggatgcgactgctccactctctcagaatgcacttcatcatgca 226  Q
    ||||||||| || | |||||| | ||| || ||||| |||||||||||||||| ||||| ||||    
19829118 tccaactccccctgtgatgtctggtgcaaccgctcctctctctcagaatgcacgtcatcgtgca 19829181  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 102 - 215
Target Start/End: Complemental strand, 17459544 - 17459431
Alignment:
102 cgaatgattatgttccacatcatccgagagcgttggagtaacatcgtcaactacatggttctccaactcctcccgcgatgtcggatgcgactgctccact 201  Q
    ||||||||| |||||||||||||  || |||||   ||| |||||||| ||||   ||||||||||||  |||||||||||||||||| | |||||  ||    
17459544 cgaatgattgtgttccacatcattagaaagcgtaacagtgacatcgtccactatggggttctccaacttttcccgcgatgtcggatgcaattgctctgct 17459445  T
202 ctctcagaatgcac 215  Q
    ||||| ||||||||    
17459444 ctctcggaatgcac 17459431  T

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