View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715_high_102 (Length: 329)
Name: NF1715_high_102
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_high_102 |
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Alignment Details
Target: chr7 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 44349742 - 44349437
Alignment:
| Q |
1 |
gtggagtgcggctagcatgtgccaaatatgctgtgtatggtgtagattatgaaggacatggacaatctgaaggtgttcgttgttacattaagaagttcaa |
100 |
Q |
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| T |
44349742 |
gtggagtacggctagcatgtgccaaatatgctgtgtatggtgtagattatgaaggacatggacaatctgaaggtgttcgttgttacattaagaagttcaa |
44349643 |
T |
|
| Q |
101 |
taacattgttaatgactgttatgactttttcaagtcagttagtggtatggattcaaagcctttgtctaatcctttgagtgtatacatttttaatcaattc |
200 |
Q |
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| T |
44349642 |
taacattgttaatgactgttatgactttttcaagtcagttagtggtatggattcaaagcctttgtctaatcttttgagtgtataca-ttttaatcaattc |
44349544 |
T |
|
| Q |
201 |
tattattttcatcattcattttcatgttaattaattccagtgcttcaagagtacaagggaaaagctaggttcttgtatggagagtccatgggtggagcag |
300 |
Q |
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| T |
44349543 |
---tattttcatcattcattttcatg----ttaattccagtgcttcaagagtacatgggaaaagctaggttcttgtatggagagtccatgggtggagcag |
44349451 |
T |
|
| Q |
301 |
ttagtctacttttg |
314 |
Q |
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|||||||||||||| |
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| T |
44349450 |
ttagtctacttttg |
44349437 |
T |
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