View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715_high_109 (Length: 321)
Name: NF1715_high_109
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_high_109 |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 38164726 - 38164415
Alignment:
| Q |
1 |
atgtttagtccatagaaaaagctacctcaaattcaaattgtcgaataaataacgtgatgttgactgaaaacttattcttctcttattatagaaataatta |
100 |
Q |
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| T |
38164726 |
atgtttagtccatagaaaaagctacctcaaattcaaattgtcgaataaataacgtgatgttgactgaaaacttattcttctcttattatagaaataatta |
38164627 |
T |
|
| Q |
101 |
ttctgtgatatgtaactcgcattaaataaacactggccttgaccnnnnnnnn----------taaacacaggcatggaaatgtgaacaagactcgaccca |
190 |
Q |
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| T |
38164626 |
ttgtgtgatat---actcgcattaaataaacactggccttgaccaaaaaaagataaaaaaaataaacacaggcatggaaatgtgaacaagactcgaccca |
38164530 |
T |
|
| Q |
191 |
tccaaaatatactacgatggatacaaatttgatatatagaatatatagtgtttaattctccaatatggttcaaagtctcattgtcctgtgaaagaacatg |
290 |
Q |
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|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38164529 |
tccaaaatatactacgatggatgcaaatttgatatatagaa--tatagtgtttaattctccaatatggttcaaagtctcattgtcctgtgaaagaacatg |
38164432 |
T |
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| Q |
291 |
ctttgtcggtcatacat |
307 |
Q |
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||||||||||||||||| |
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| T |
38164431 |
ctttgtcggtcatacat |
38164415 |
T |
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