View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715_high_120 (Length: 311)
Name: NF1715_high_120
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_high_120 |
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Alignment Details
Target: chr3 (Bit Score: 181; Significance: 8e-98; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 24 - 304
Target Start/End: Complemental strand, 37562521 - 37562245
Alignment:
| Q |
24 |
aaaaagtgtggagggaaaattgggattttcaaagagacgtgccgtttggagggaactgaaaacttaatgtaaaagttgtacagaaacaaaatagtgaaat |
123 |
Q |
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| T |
37562521 |
aaaaagcgtggagggaaaattgggattttcaaagagacgtgccgtttggagggaactgaaaatttaatgtaaaagttgtacaaaaacaaaatagtgaaat |
37562422 |
T |
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| Q |
124 |
aaccaattccggtggatctagatttcaattttgtatagagtgtcagtgtatgtgatcttgacacgcctacaacacatgtattacgtgagagaattcaaca |
223 |
Q |
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| T |
37562421 |
aaccaattccggtggatctagatttcaattttgtata------cagtgtatgtgatcttgacacgcctgcaacacatgtcttacgtgagagaattcaaca |
37562328 |
T |
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| Q |
224 |
a--nnnnnnnnnnnnnnnnggtggtgaattcaacaaatttgtttattactactattgtttatcatttgaggggtgttcctttg |
304 |
Q |
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| T |
37562327 |
attttttttttttttttttggtggtgaattcaacaaatttgtttattactactattgtttatcatttgaggggtgttcctttg |
37562245 |
T |
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