View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715_high_130 (Length: 295)
Name: NF1715_high_130
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_high_130 |
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Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 18 - 283
Target Start/End: Complemental strand, 40994393 - 40994128
Alignment:
| Q |
18 |
tctatcaactttttgaattgatcttttttctaattgatgtttttattgaaacattgttataaaaaagattgttccatccggagatgaatcggagcggatg |
117 |
Q |
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| T |
40994393 |
tctatcaactttttgaattgatcttttttctaattgatgtttttattgaaacattgttataaaaaagattgttccatccggagatgaatcggagcggatg |
40994294 |
T |
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| Q |
118 |
caaagtgctttgaatgtaaaacatttgattctaaagactcaaatgcatccatatgagctttgtggaattgaattcttgctcaacagttgcccattgcttc |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40994293 |
caaagtgctttgaatgtaaaacatttgattctaaagactcaaatgcatccatatgagctttgtggaattgaattcttgctcaacagttgcccattgcttg |
40994194 |
T |
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| Q |
218 |
aaaaactcacactggacataagtccacaagttatatttgaggtgagtaaaatactttacatttcat |
283 |
Q |
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| T |
40994193 |
aaaaacttacattggacataagtccacaagttatatttgaggtgagtaaaatactttacatttcat |
40994128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 126 - 283
Target Start/End: Complemental strand, 40986521 - 40986363
Alignment:
| Q |
126 |
tttgaatgtaaaacatttgattctaaagactcaaatgcatccatatgagctttgtggaattgaattcttgctcaacagttgcccattgcttcaaaaactc |
225 |
Q |
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||||||||||| ||||||||||||||| || ||||||||| |||||||||||||||| ||||||||||||| ||||||||||| ||||| |||||||| |
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| T |
40986521 |
tttgaatgtaagacatttgattctaaaaacacaaatgcataaatatgagctttgtggatttgaattcttgcttaacagttgcccgttgctagaaaaactc |
40986422 |
T |
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| Q |
226 |
acactggacataagtccacaagttatatttgaggtgagtaaaata-ctttacatttcat |
283 |
Q |
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| T |
40986421 |
acattggacataagtcaacaagttatatttaaggtgagtcaaataccgttacatttcat |
40986363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 233 - 270
Target Start/End: Complemental strand, 40989789 - 40989752
Alignment:
| Q |
233 |
acataagtccacaagttatatttgaggtgagtaaaata |
270 |
Q |
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| T |
40989789 |
acataagtccacaagttatatttgaggtgagtcaaata |
40989752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 88 - 281
Target Start/End: Original strand, 21180616 - 21180809
Alignment:
| Q |
88 |
gttccatccggagatgaatcggagcggatgcaaagtgctttgaatgtaaaacatttgattctaaagactcaaatgcatccatatgagctttgtggaattg |
187 |
Q |
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|||||||| ||||||||| ||| | |||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||| ||| |
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| T |
21180616 |
gttccatctggagatgaaccggtgaagatgcaaagtgctttgaatgtaaaacatttgactctaaagactaaaatgcattcatatgagctttgtggatttg |
21180715 |
T |
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| Q |
188 |
aattcttgctcaacagttgcccattgcttcaaaaactcacactggacataagtccacaagttatatttgaggtgagtaaaatactttacatttc |
281 |
Q |
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| T |
21180716 |
aattcatgctcaacagttgcccattgcttgaaaaactcatattggacataagtccacaacttatatttgaggtcagtcaaatactttacatttc |
21180809 |
T |
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