View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715_high_134 (Length: 289)
Name: NF1715_high_134
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_high_134 |
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Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 17 - 281
Target Start/End: Original strand, 47151249 - 47151510
Alignment:
| Q |
17 |
gtttcatcttaactcttgcaaagttgcaagaaacaaaaagaactaaactaatttgttttgaaattttgtttaggttgaagagagtagatacttgtttgaa |
116 |
Q |
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| T |
47151249 |
gtttcatcttaactcttgcaaagttgcaagaaacaaaaagaactaaact---ttgttttgaaattttgtttaggttgaagagagtagatacttgtttgaa |
47151345 |
T |
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| Q |
117 |
gcaaaaacgattaaaaagatggaaattttgatactttcaactcttggatggaagatgagtccagcaacacctctttcttttattgattttatcataagaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
47151346 |
gcaaaaacgattaaaaagatggaaattttgatactttcaactcttggatggaagatgaatccagcaacacctctttcttttattgattttatcataagaa |
47151445 |
T |
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| Q |
217 |
gacttggattgaaagatcatctaatttgttgggagttccttaagagatgtgaaggtgttcatctc |
281 |
Q |
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|||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||| |
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| T |
47151446 |
gacttggattgaaagaccatctaatttgttgggagtttcttaagagatgtgaaggtgttcttctc |
47151510 |
T |
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