View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1715_high_136 (Length: 283)

Name: NF1715_high_136
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1715_high_136
NF1715_high_136
[»] chr4 (2 HSPs)
chr4 (171-271)||(46166869-46166970)
chr4 (171-213)||(46166339-46166381)
[»] chr6 (2 HSPs)
chr6 (171-271)||(18101749-18101852)
chr6 (171-213)||(18102319-18102361)
[»] chr3 (3 HSPs)
chr3 (171-219)||(34832109-34832157)
chr3 (171-213)||(34832710-34832752)
chr3 (231-271)||(34832181-34832221)
[»] chr5 (1 HSPs)
chr5 (171-213)||(6956928-6956970)


Alignment Details
Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 171 - 271
Target Start/End: Complemental strand, 46166970 - 46166869
Alignment:
Q  171 taaacggtcatgatcaaattccactaaacaaggattggcacacatgaat-nnnnnnncacgtatcctctgctcaagaaacgtgttgcttcctcttctata 269  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||        || ||||||||||||||||||||||| ||||||||||||||||    
T  46166970 taaacggtcatgatcaaattccactaaacaaggattggcacacttgaataaaaaaaacatgtatcctctgctcaagaaacgtgctgcttcctcttctata 46166871  T
Q  270 tt 271  Q
    ||    
T  46166870 tt 46166869  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 171 - 213
Target Start/End: Original strand, 46166339 - 46166381
Alignment:
Q  171 taaacggtcatgatcaaattccactaaacaaggattggcacac 213  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  46166339 taaacggtcatgatcaaattccactaaacaaggattggcacac 46166381  T

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Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 171 - 271
Target Start/End: Original strand, 18101749 - 18101852
Alignment:
Q  171 taaacggtcatgatcaaattccactaaacaaggattggcacacatgaatnnnnnnn---cacgtatcctctgctcaagaaacgtgttgcttcctcttcta 267  Q
    |||||||| |||||||||||||||||||||||||||| ||||| |||||          ||||||||||||||||||||||||||| |||||||||||||    
T  18101749 taaacggttatgatcaaattccactaaacaaggattgacacacttgaataaaaaaaaaacacgtatcctctgctcaagaaacgtgtcgcttcctcttcta 18101848  T
Q  268 tatt 271  Q
    ||||    
T  18101849 tatt 18101852  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 171 - 213
Target Start/End: Complemental strand, 18102361 - 18102319
Alignment:
Q  171 taaacggtcatgatcaaattccactaaacaaggattggcacac 213  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  18102361 taaacggtcatgatcaaattccactaaataaggattggcacac 18102319  T

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Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 34832109 - 34832157
Alignment:
Q  171 taaacggtcatgatcaaattccactaaacaaggattggcacacatgaat 219  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  34832109 taaacggtcatgatcaaattccactaaacaaggattggcacacttgaat 34832157  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 171 - 213
Target Start/End: Complemental strand, 34832752 - 34832710
Alignment:
Q  171 taaacggtcatgatcaaattccactaaacaaggattggcacac 213  Q
    ||||||||||||||||||||||||||||||||||||| |||||    
T  34832752 taaacggtcatgatcaaattccactaaacaaggattgacacac 34832710  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 231 - 271
Target Start/End: Original strand, 34832181 - 34832221
Alignment:
Q  231 tatcctctgctcaagaaacgtgttgcttcctcttctatatt 271  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  34832181 tatcctctgctcaagaaacgtgtcgcttcctcttctatatt 34832221  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 171 - 213
Target Start/End: Complemental strand, 6956970 - 6956928
Alignment:
Q  171 taaacggtcatgatcaaattccactaaacaaggattggcacac 213  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  6956970 taaacggtcatgatcaaattccactaaacaaggattggcacac 6956928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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