View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715_high_139 (Length: 281)
Name: NF1715_high_139
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_high_139 |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 19 - 271
Target Start/End: Complemental strand, 44000198 - 43999946
Alignment:
| Q |
19 |
ctttgataatggaccttggcctaaaatgagtgcttatgtaagcatttcctgcagagtgtcctttcttgcatgaacttctattagttttcaatttacgttg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44000198 |
ctttgataatggaccttggcctaaaatgagtgcttatgtaagcatttcctgcagagtgtcctttcttgcatgaacttctattagttttcaatttacgttg |
44000099 |
T |
|
| Q |
119 |
atgattacttattaataactccttcaggaaagatgtcgtatattgttgcgatttgctgatttggttgagaagcacaatgatgagattgcagctctggagg |
218 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44000098 |
atgattacttattaataactccttcaggaaagatgtcgtatattgttgcgatttgctgatttggttgagaagcacaatgatgagattgcagctctggagg |
43999999 |
T |
|
| Q |
219 |
catggaacaatggaaagctttatgaacaggctgccaaagctgaagtacctatg |
271 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43999998 |
catggaacaatggaaagctttatgaacaggctgccaaagctgaagtacctatg |
43999946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 159 - 271
Target Start/End: Original strand, 39294192 - 39294304
Alignment:
| Q |
159 |
tattgttgcgatttgctgatttggttgagaagcacaatgatgagattgcagctctggaggcatggaacaatggaaagctttatgaacaggctgccaaagc |
258 |
Q |
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||||| |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
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| T |
39294192 |
tattgctgcgttttgctgatttggttgagaagcacaatgccgagattgcagctctggaggcatggaacaatggaaagctttattaacaggctgacaaagc |
39294291 |
T |
|
| Q |
259 |
tgaagtacctatg |
271 |
Q |
| |
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| | ||||||||| |
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| T |
39294292 |
taacgtacctatg |
39294304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 19 - 131
Target Start/End: Original strand, 39294083 - 39294195
Alignment:
| Q |
19 |
ctttgataatggaccttggcctaaaatgagtgcttatgtaagcatttcctgcagagtgtcctttcttgcatgaacttctattagttttcaatttacgttg |
118 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||| ||| |||||| || |||||||| |
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| T |
39294083 |
ctttcataatggaccttgacctaaaatgagtgcttatgtaagcatttccttcagcgtgtcctttcttacatgaacttatatgagttttaaaattacgttg |
39294182 |
T |
|
| Q |
119 |
atgattacttatt |
131 |
Q |
| |
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||||| ||||||| |
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| T |
39294183 |
atgatgacttatt |
39294195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 159 - 271
Target Start/End: Complemental strand, 8357534 - 8357422
Alignment:
| Q |
159 |
tattgttgcgatttgctgatttggttgagaagcacaatgatgagattgcagctctggaggcatggaacaatggaaagctttatgaacaggctgccaaagc |
258 |
Q |
| |
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||||| |||| |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
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| T |
8357534 |
tattgctgcgttttgctgatttggttgagaagcacaatgcttagattgcagctctggaggcatggaacaatggaaagctttattaacaggctgacaaagc |
8357435 |
T |
|
| Q |
259 |
tgaagtacctatg |
271 |
Q |
| |
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| | ||||||||| |
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|
| T |
8357434 |
ttatgtacctatg |
8357422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 19 - 131
Target Start/End: Complemental strand, 8357643 - 8357531
Alignment:
| Q |
19 |
ctttgataatggaccttggcctaaaatgagtgcttatgtaagcatttcctgcagagtgtcctttcttgcatgaacttctattagttttcaatttacgttg |
118 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||| || |||||||| |
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|
| T |
8357643 |
ctttcataatggaccttggcctaaaatgaatgcttatgtaagcatttccttcagagtgtcctttcttacatgaacttatattagttttaaaattacgttg |
8357544 |
T |
|
| Q |
119 |
atgattacttatt |
131 |
Q |
| |
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||||| ||||||| |
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|
| T |
8357543 |
atgatgacttatt |
8357531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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