View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715_high_142 (Length: 276)
Name: NF1715_high_142
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_high_142 |
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Alignment Details
Target: chr4 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 77 - 264
Target Start/End: Original strand, 9500171 - 9500357
Alignment:
| Q |
77 |
cttatatatgttgtgtagtttgtacttggtagacctgtcgtattgatttaacattatgccttcaattttgtttcttcaatttttgagcatttatatgcat |
176 |
Q |
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| T |
9500171 |
cttatatatgttgtgtagtttgtacttggtagccctgtcgtattgatttaacattacgccttcaaatttttttcttcaatttttgagcatttatatgcat |
9500270 |
T |
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| Q |
177 |
gtattataagttactcgagttgtctgcataagcttcagttgacatatcaattatcaaaaatatattttatgatttgtgtatgaaacaa |
264 |
Q |
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| T |
9500271 |
gtattataagttactcgagttgtctgcataagcttcagttgacatatcaattatc-aaaatatattttatgatttgtgtatgtaacaa |
9500357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 9500098 - 9500148
Alignment:
| Q |
4 |
ttttgcattcttttacgtcctctgttttacttgaagccctcttctattatg |
54 |
Q |
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| T |
9500098 |
ttttgcattcttttactacctctgttttacttgaagccctcttctattatg |
9500148 |
T |
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