View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715_high_143 (Length: 272)
Name: NF1715_high_143
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_high_143 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 14 - 258
Target Start/End: Complemental strand, 338698 - 338454
Alignment:
| Q |
14 |
tcatcagaatacaatgcaaaattggtattaagtaccaaagtttatcaaattcagctgcatagttaatgcagcaaaaatatactatattttcatgcaaaac |
113 |
Q |
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|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
338698 |
tcataagaatacaatgcaaaaatggtattaagtaccaaagtttatcaaattcagctgcatagttaatgcagcaaaaaaatactatattttcatgcaaaac |
338599 |
T |
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| Q |
114 |
gtaacaccagcaaaataaaaagatgaagagaaaagataggtagtgataattgtactagtcctcaagaatttagttaatttcaaaagaccaggtgtgttag |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
338598 |
gtaacaccagcaaaataaaaagatgaagagaaaagataggtagtgataattgtactagtcctcaagaatttacttaatttcaaaagaccaggtgtgttag |
338499 |
T |
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| Q |
214 |
gcatctaaatgtatgttacacaaactgtttcggttacaatgtttc |
258 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
338498 |
gcatctaaatgtatgttacacaaactgtttcggttacaatgtttc |
338454 |
T |
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