View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1715_high_144 (Length: 270)

Name: NF1715_high_144
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1715_high_144
NF1715_high_144
[»] chr5 (13 HSPs)
chr5 (1-247)||(39168811-39169060)
chr5 (1-247)||(40418248-40418488)
chr5 (1-247)||(39879779-39880025)
chr5 (1-247)||(39726383-39726629)
chr5 (1-126)||(39399824-39399949)
chr5 (1-247)||(38987670-38987910)
chr5 (1-120)||(3299498-3299620)
chr5 (1-120)||(3392391-3392513)
chr5 (13-114)||(1163693-1163794)
chr5 (13-114)||(1849942-1850046)
chr5 (12-118)||(40102209-40102315)
chr5 (164-247)||(3299640-3299726)
chr5 (164-247)||(3392533-3392619)
[»] chr4 (2 HSPs)
chr4 (1-247)||(25912168-25912411)
chr4 (48-214)||(44444680-44444838)


Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 39168811 - 39169060
Alignment:
Q  1 gctgatgccgtggttgctcgtgtggaagattttggaaataatgacacaacttttcaaatcaaaactcatctaggtcatattttaaaatccggtgactatg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39168811 gctgatgccgtggttgctcgtgtggaagattttggaaataatgacacaacttttcaaatcaaaactcatctaggtcatattttaaaatccggtgactatg 39168910  T
Q  101 ctcttggttatgacttgtctggaggaaaagaaggaggaggagctaacaccaatatcaatggcgaccttcctgctgcaattttgattaccaagagtagtta 200  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39168911 ctcttggttatgacttgtctggacgtaaagaaggaggaggagctaacaccaatatcaatggcgaccttcctgctgcaattttgattaccaagagtagtta 39169010  T
Q  201 tgatgaagaaaatggtagaattgt---tgttgttgaggataagtgggaat 247  Q
    ||||||||||||||||||||||||   ||||||||||| |||||||||||    
T  39169011 tgatgaagaaaatggtagaattgttgttgttgttgagggtaagtgggaat 39169060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 40418248 - 40418488
Alignment:
Q  1 gctgatgccgtggttgctcgtgtggaagattttggaaataatgacacaacttttcaaatcaaaactcatctaggtcatattttaaaatccggtgactatg 100  Q
    |||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||  |||||||| |||| |||||||||| |||||||| |||    
T  40418248 gctgatgctgtggttgctcgtgtgaaagatattggaaataatgacacaacttttcaaatcaggactcatcttggtcgtattttaaaacccggtgaccatg 40418347  T
Q  101 ctcttggttatgacttgtctggaggaaaagaaggaggaggagctaacaccaatatcaatggcgaccttcctgctgcaattttgattaccaagagtagtta 200  Q
    |||||||||||||| ||||||||||      || |||||||||| ||||||| ||||||  | ||||||||||||| |||||||| ||||||| ||||||    
T  40418348 ctcttggttatgacctgtctggagg------agaaggaggagctgacaccaacatcaatatcaaccttcctgctgccattttgatcaccaagattagtta 40418441  T
Q  201 tgatgaagaaaatggtagaattgttgttgttgaggataagtgggaat 247  Q
    ||  ||||| ||||||||| |||||| | || | |||||||||||||    
T  40418442 tgccgaagagaatggtagagttgttgctcttcatgataagtgggaat 40418488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 39879779 - 39880025
Alignment:
Q  1 gctgatgccgtggttgctcgtgtggaagattttggaaataatgacacaacttttcaaatcaaaactcatctaggtcatattttaaaatccggtgactatg 100  Q
    |||||||| ||||||||||||||| |||||  |||||||||||||||||||||||||||||  |||||||| |||| |||||||||| |||||||| |||    
T  39879779 gctgatgctgtggttgctcgtgtgaaagatactggaaataatgacacaacttttcaaatcaggactcatcttggtcgtattttaaaacccggtgaccatg 39879878  T
Q  101 ctcttggttatgacttgtctggaggaaaagaaggaggaggagctaacaccaatatcaatggcgaccttcctgctgcaattttgattaccaagagtagtta 200  Q
    |||||||||||||| |||||||||||  || || |||||||||| ||||||| | ||||  | ||||||||||||| |||||||| | ||||| ||||||    
T  39879879 ctcttggttatgacctgtctggaggagtaggagaaggaggagctgacaccaacaccaataacaaccttcctgctgccattttgatcagcaagattagtta 39879978  T
Q  201 tgatgaagaaaatggtagaattgttgttgttgaggataagtgggaat 247  Q
    ||  ||||  ||||||||| |||||| |||  |||||||||||||||    
T  39879979 tgccgaagtgaatggtagagttgttgctgtcaaggataagtgggaat 39880025  T

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Target: chr5; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 39726383 - 39726629
Alignment:
Q  1 gctgatgccgtggttgctcgtgtggaagattttggaaataatgacacaacttttcaaatcaaaactcatctaggtcatattttaaaatccggtgactatg 100  Q
    |||||||| ||||||||||||||| |||||  |||||||||||||||||||||||||||||  |||||||| |||| ||| |||||| |||||||| |||    
T  39726383 gctgatgctgtggttgctcgtgtgaaagatactggaaataatgacacaacttttcaaatcaggactcatctcggtcgtatcttaaaacccggtgaccatg 39726482  T
Q  101 ctcttggttatgacttgtctggaggaaaagaaggaggaggagctaacaccaatatcaatggcgaccttcctgctgcaattttgattaccaagagtagtta 200  Q
    |||||||||||||| |||||||||||  || || |||||||||| ||||||| | ||||  | ||||||||||||| |||||||| | ||||| ||||||    
T  39726483 ctcttggttatgacctgtctggaggagtaggagaaggaggagctgacaccaacaccaataacaaccttcctgctgccattttgatcagcaagattagtta 39726582  T
Q  201 tgatgaagaaaatggtagaattgttgttgttgaggataagtgggaat 247  Q
    ||  ||||  ||||||||| |||||| |||  |||||||||||||||    
T  39726583 tgccgaagtgaatggtagagttgttgctgtcaaggataagtgggaat 39726629  T

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Target: chr5; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 39399824 - 39399949
Alignment:
Q  1 gctgatgccgtggttgctcgtgtggaagattttggaaataatgacacaacttttcaaatcaaaactcatctaggtcatattttaaaatccggtgactatg 100  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  |||||||| ||||||||||||||||||||||||||||    
T  39399824 gctgatgccgtggttgctcgtgtggaaaattttggaaataatgacacaacttttcaaatcaggactcatcttggtcatattttaaaatccggtgactatg 39399923  T
Q  101 ctcttggttatgacttgtctggagga 126  Q
    ||||||||||||||||||||||||||    
T  39399924 ctcttggttatgacttgtctggagga 39399949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 38987670 - 38987910
Alignment:
Q  1 gctgatgccgtggttgctcgtgtggaagattttggaaataatgacacaacttttcaaatcaaaactcatctaggtcatattttaaaatccggtgactatg 100  Q
    |||||||| ||||||||||||||| |||||  |||||||||||||||||||||||||||||  |||||||| |||| ||| |||||| |||||||| |||    
T  38987670 gctgatgctgtggttgctcgtgtgaaagatactggaaataatgacacaacttttcaaatcaggactcatctcggtcgtatcttaaaacccggtgaccatg 38987769  T
Q  101 ctcttggttatgacttgtctggaggaaaagaaggaggaggagctaacaccaatatcaatggcgaccttcctgctgcaattttgattaccaagagtagtta 200  Q
    |||||||||||||| ||||||||||      || |||||||||| ||||||| | ||||  | ||||||||||||| |||||||| | ||||| ||||||    
T  38987770 ctcttggttatgacctgtctggagg------agaaggaggagctgacaccaacaccaataacaaccttcctgctgccattttgatcagcaagattagtta 38987863  T
Q  201 tgatgaagaaaatggtagaattgttgttgttgaggataagtgggaat 247  Q
    ||  ||||  ||||||||| |||||| |||  |||||||||||||||    
T  38987864 tgccgaagtgaatggtagagttgttgctgtcaaggataagtgggaat 38987910  T

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Target: chr5; HSP #7
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 3299498 - 3299620
Alignment:
Q  1 gctgatgccgtggttgctcgtgtggaagattttggaaataatga---cacaacttttcaaatcaaaactcatctaggtcatattttaaaatccggtgact 97  Q
    ||||||||| |||||||||||||| ||||| ||||||||||| |   |||||||||||||||||| |||||||| |||| |||||||||| ||||||||     
T  3299498 gctgatgccatggttgctcgtgtgaaagatattggaaataataatcacacaacttttcaaatcaagactcatcttggtcgtattttaaaacccggtgacc 3299597  T
Q  98 atgctcttggttatgacttgtct 120  Q
    ||||||||||||||||| |||||    
T  3299598 atgctcttggttatgacctgtct 3299620  T

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Target: chr5; HSP #8
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 3392391 - 3392513
Alignment:
Q  1 gctgatgccgtggttgctcgtgtggaagattttggaaataatga---cacaacttttcaaatcaaaactcatctaggtcatattttaaaatccggtgact 97  Q
    ||||||||| |||||||||||||| ||||| ||||||||||| |   |||||||||||||||||| |||||||| |||| |||||||||| ||||||||     
T  3392391 gctgatgccatggttgctcgtgtgaaagatattggaaataataatcacacaacttttcaaatcaagactcatcttggtcgtattttaaaacccggtgacc 3392490  T
Q  98 atgctcttggttatgacttgtct 120  Q
    ||||||||||||||||| |||||    
T  3392491 atgctcttggttatgacctgtct 3392513  T

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Target: chr5; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 13 - 114
Target Start/End: Complemental strand, 1163794 - 1163693
Alignment:
Q  13 gttgctcgtgtggaagattttggaaataatga-cacaacttttcaaatcaaaactcatctaggtcatattttaaaatccggtgactatgctcttggttat 111  Q
    |||||||||||  ||||| ||||||||||| | |||| ||||||||||||  |||||||| |||| |||||||||| |||||||| ||||||||||||||    
T  1163794 gttgctcgtgtcaaagatattggaaataataatcaca-cttttcaaatcaggactcatcttggtcgtattttaaaacccggtgaccatgctcttggttat 1163696  T
Q  112 gac 114  Q
    |||    
T  1163695 gac 1163693  T

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Target: chr5; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 13 - 114
Target Start/End: Original strand, 1849942 - 1850046
Alignment:
Q  13 gttgctcgtgtggaagattttggaaataatga---cacaacttttcaaatcaaaactcatctaggtcatattttaaaatccggtgactatgctcttggtt 109  Q
    |||||||||||| ||||| ||||||||||| |   |||||||||||||||||  ||||||||  ||| |||||||||| | |||||| ||||||||||||    
T  1849942 gttgctcgtgtgaaagatattggaaataataatcacacaacttttcaaatcaggactcatcttagtcgtattttaaaacctggtgaccatgctcttggtt 1850041  T
Q  110 atgac 114  Q
    |||||    
T  1850042 atgac 1850046  T

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Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 118
Target Start/End: Complemental strand, 40102315 - 40102209
Alignment:
Q  12 ggttgctcgtgtggaagattttggaaataatgacacaacttttcaaatcaaaactcatctaggtcatattttaaaatccggtgactatgctcttggttat 111  Q
    ||||||||||||| ||||||||||||| |||||||| |  ||| | ||||| |||||||| ||| || |||| ||||  |||||| ||||| ||||||||    
T  40102315 ggttgctcgtgtgaaagattttggaaagaatgacacgagatttaatatcaagactcatctgggttatcttttgaaatttggtgaccatgcttttggttat 40102216  T
Q  112 gacttgt 118  Q
    |||||||    
T  40102215 gacttgt 40102209  T

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Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 247
Target Start/End: Original strand, 3299640 - 3299726
Alignment:
Q  164 accttcctgctgcaattttgattaccaagagtagttatgatgaagaa---aatggtagaattgttgttgttgaggataagtgggaat 247  Q
    ||||||||||||| |||||||| ||||| | ||||||||  |||||    ||||||||| |||||| |||| |||||||||||||||    
T  3299640 accttcctgctgccattttgatcaccaaaattagttatgccgaagaggagaatggtagagttgttgctgttcaggataagtgggaat 3299726  T

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Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 247
Target Start/End: Original strand, 3392533 - 3392619
Alignment:
Q  164 accttcctgctgcaattttgattaccaagagtagttatgatgaagaa---aatggtagaattgttgttgttgaggataagtgggaat 247  Q
    ||||||||||||| |||||||| ||||| | ||||||||  |||||    ||||||||| |||||| |||| |||||||||||||||    
T  3392533 accttcctgctgccattttgatcaccaaaattagttatgccgaagaggagaatggtagagttgttgctgttcaggataagtgggaat 3392619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 109; Significance: 7e-55; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 25912411 - 25912168
Alignment:
Q  1 gctgatgccgtggttgctcgtgtggaagattttggaaataatgacacaacttttcaaatcaaaactcatctaggtcatattttaaaatccggtgactatg 100  Q
    |||||||  ||||||||||||||| ||||| ||||||||||||||||||||||||||||||  |||||||| |||| |||| ||||| ||| |||| |||    
T  25912411 gctgatgatgtggttgctcgtgtgaaagatattggaaataatgacacaacttttcaaatcaggactcatcttggtcgtattctaaaacccgatgaccatg 25912312  T
Q  101 ctcttggttatgacttgtctggaggaaaagaaggaggaggagctaacaccaatatcaatggcgaccttcctgctgcaattttgattaccaagagtagtta 200  Q
    |||||||||||||| ||||| |||||  |||||||   |||||||||||||| | ||||  | |||||| |||||| |||||||| ||||||| ||||||    
T  25912311 ctcttggttatgacctgtctagaggaggagaagga---ggagctaacaccaacaccaataacaaccttcatgctgccattttgatcaccaagattagtta 25912215  T
Q  201 tgatgaagaaaatggtagaattgttgttgttgaggataagtgggaat 247  Q
    ||  ||||| ||||||||| |||||| |||| |||||||||||||||    
T  25912214 tgccgaagagaatggtagagttgttgctgttcaggataagtgggaat 25912168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 48 - 214
Target Start/End: Complemental strand, 44444838 - 44444680
Alignment:
Q  48 aacttttcaaatcaaaactcatctaggtcatattttaaaatccggtgactatgctcttggttatgacttgtctggaggaaaagaaggaggaggagctaac 147  Q
    ||||||||||||||| |||||||| |||| |||||||||| | |||||||||||||||||||||||     ||  |||   || | ||||| ||||||||    
T  44444838 aacttttcaaatcaagactcatcttggtcgtattttaaaacctggtgactatgctcttggttatga-----ctatagg---agtaagaggaagagctaac 44444747  T
Q  148 accaatatcaatggcgaccttcctgctgcaattttgattaccaagagtagttatgatgaagaaaatg 214  Q
    | ||| | || ||||||||||| ||||||||||||||||||||| | |||||| |||||||| ||||    
T  44444746 atcaacaccattggcgaccttcgtgctgcaattttgattaccaatactagttacgatgaagagaatg 44444680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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