View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715_high_145 (Length: 266)
Name: NF1715_high_145
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_high_145 |
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Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 10 - 255
Target Start/End: Complemental strand, 39952089 - 39951844
Alignment:
| Q |
10 |
acatcatcaagagatatttgctcaacataatttaaatctaatacatattttaacaacaaaatcagagtgcccatggataaagataaacgattgaatattt |
109 |
Q |
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| T |
39952089 |
acataatcaagagatatttgctcaacataatttaaatctaatacatattttaacaacaaaatcagagtgcccatggataaagataaacgattgaatattt |
39951990 |
T |
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| Q |
110 |
tcaggcaatgagtggatcatacccattatcaacttgaagcctcggtgttgtggttgctgtcatgaaatagcatccatttggagaccattcacttgacaca |
209 |
Q |
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| T |
39951989 |
tcaggcaatgagtagatcatacccattatcaacttgaagcctcggtgttgtggttgctgtcatgaaatagcacccatttggagaccattcacttgacaca |
39951890 |
T |
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| Q |
210 |
gaccattcaagttgtttcctttctacgtaatcccaaaaatacctag |
255 |
Q |
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| T |
39951889 |
gaccattcaagttgtttcctttctacgtaatcccaaaaatacctag |
39951844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 60 - 218
Target Start/End: Original strand, 34230589 - 34230769
Alignment:
| Q |
60 |
taacaacaaaatcagagtgcccatggataaagataaacgattgaatattttcaggcaatgagtggatca----------------------tacccatta |
137 |
Q |
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| T |
34230589 |
taacaacataatcagagtgcccatggataaagataaacaattgaatattttcaggcaatgagtagatcaaggccccaccagtggaaagacatacccatta |
34230688 |
T |
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| Q |
138 |
tcaacttgaagcctcggtgttgtggttgctgtcatgaaatagcatccatttggagaccattcacttgacacagaccattca |
218 |
Q |
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| T |
34230689 |
tcaacttgaagccttggagctgttgttgctgtcatgaaatagcacccatctggagaccattcacttgacacagaccattca |
34230769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 10 - 64
Target Start/End: Original strand, 34230472 - 34230526
Alignment:
| Q |
10 |
acatcatcaagagatatttgctcaacataatttaaatctaatacatattttaaca |
64 |
Q |
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| T |
34230472 |
acataatcaagagatatttactcaacataatttaaatctaatacatattttaaca |
34230526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 59 - 108
Target Start/End: Complemental strand, 30339394 - 30339345
Alignment:
| Q |
59 |
ttaacaacaaaatcagagtgcccatggataaagataaacgattgaatatt |
108 |
Q |
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| T |
30339394 |
ttaacaacaaaatcagagtgcccatggataaagataaacaattgaatatt |
30339345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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