View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715_high_148 (Length: 262)
Name: NF1715_high_148
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_high_148 |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 19 - 244
Target Start/End: Original strand, 45312394 - 45312619
Alignment:
| Q |
19 |
aaaatatctaaatacatgaatggtcctatagattaatataaacatagcctcgtaatagaatggtcccatagactgtacatttggttatgtttgatttcat |
118 |
Q |
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| T |
45312394 |
aaaatatctaaatacatgaatggtcctatagattaatataaacatagcctcgtaatagaatggtcccatagactgtacatttggttatgtttgatttcat |
45312493 |
T |
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| Q |
119 |
gtctaaacttacttttatctcatgtcaaatagaattttagtgaaaatgtaggaatttggtatgtaacttttgtgttgcattgtaaatccatagtaagtta |
218 |
Q |
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| T |
45312494 |
gtctaaacttacttttatctcatgtcaaatagaattttagtgaaaatgtaggaatttggtatgtaacttttgtgttacattgtaaatccatagtaagtta |
45312593 |
T |
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| Q |
219 |
ttcatcaaacttcttaaaggagtaac |
244 |
Q |
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| T |
45312594 |
ttcatcaaacttcttaaaggagtaac |
45312619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 179 - 244
Target Start/End: Complemental strand, 54633144 - 54633079
Alignment:
| Q |
179 |
atgtaacttttgtgttgcattgtaaatccatagtaagttattcatcaaacttcttaaaggagtaac |
244 |
Q |
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| T |
54633144 |
atgtaccttttgagttacattgtaaatccatcttaagttaatcatcaaacttcttaaaggagtaac |
54633079 |
T |
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