View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1715_high_154 (Length: 256)

Name: NF1715_high_154
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1715_high_154
NF1715_high_154
[»] chr1 (10 HSPs)
chr1 (18-256)||(9300904-9301142)
chr1 (46-132)||(38737286-38737372)
chr1 (22-99)||(41834800-41834877)
chr1 (51-136)||(39668848-39668934)
chr1 (39-100)||(32815207-32815268)
chr1 (12-96)||(35365567-35365651)
chr1 (50-113)||(42483270-42483333)
chr1 (55-92)||(2574925-2574962)
chr1 (75-136)||(13028992-13029053)
chr1 (73-113)||(40043330-40043370)
[»] chr2 (9 HSPs)
chr2 (22-136)||(3636403-3636517)
chr2 (39-161)||(14812250-14812373)
chr2 (34-113)||(18375489-18375568)
chr2 (69-137)||(28538027-28538095)
chr2 (38-119)||(37528691-37528773)
chr2 (51-136)||(1758460-1758545)
chr2 (55-139)||(879506-879590)
chr2 (17-140)||(28489121-28489244)
chr2 (39-161)||(37331805-37331928)
[»] scaffold0065 (1 HSPs)
scaffold0065 (22-136)||(49061-49178)
[»] chr4 (14 HSPs)
chr4 (35-132)||(50783548-50783645)
chr4 (12-114)||(43361811-43361913)
chr4 (22-136)||(35798985-35799101)
chr4 (29-113)||(4066403-4066487)
chr4 (45-95)||(16530221-16530271)
chr4 (62-136)||(31377597-31377670)
chr4 (62-136)||(34461364-34461438)
chr4 (29-86)||(2914764-2914821)
chr4 (39-136)||(45219017-45219114)
chr4 (39-87)||(4512822-4512870)
chr4 (37-137)||(43154558-43154658)
chr4 (43-94)||(39985076-39985127)
chr4 (62-136)||(11899959-11900033)
chr4 (33-77)||(21111778-21111822)
[»] chr3 (10 HSPs)
chr3 (29-136)||(35044076-35044183)
chr3 (22-137)||(42225984-42226098)
chr3 (34-137)||(54259933-54260036)
chr3 (22-84)||(46370882-46370944)
chr3 (44-137)||(50888867-50888960)
chr3 (52-95)||(3432475-3432518)
chr3 (67-137)||(34908559-34908628)
chr3 (52-113)||(32208106-32208167)
chr3 (17-92)||(7753111-7753186)
chr3 (55-103)||(16144125-16144173)
[»] scaffold0172 (2 HSPs)
scaffold0172 (39-109)||(19453-19523)
scaffold0172 (54-138)||(28502-28586)
[»] chr7 (6 HSPs)
chr7 (28-136)||(23803360-23803468)
chr7 (45-161)||(37134112-37134228)
chr7 (84-161)||(1397886-1397964)
chr7 (37-95)||(7723147-7723205)
chr7 (62-98)||(7712527-7712563)
chr7 (39-139)||(30965736-30965836)
[»] chr6 (3 HSPs)
chr6 (45-136)||(25211655-25211746)
chr6 (39-102)||(33193800-33193863)
chr6 (92-140)||(25181482-25181530)
[»] chr8 (5 HSPs)
chr8 (17-135)||(42409070-42409188)
chr8 (16-113)||(2072192-2072289)
chr8 (39-164)||(10328688-10328815)
chr8 (55-120)||(34505206-34505271)
chr8 (62-136)||(13177756-13177830)
[»] chr5 (6 HSPs)
chr5 (18-81)||(28995855-28995918)
chr5 (18-81)||(28992577-28992640)
chr5 (77-162)||(19893338-19893424)
chr5 (12-95)||(10803398-10803481)
chr5 (16-161)||(8713775-8713920)
chr5 (78-111)||(5827148-5827181)
[»] scaffold0129 (2 HSPs)
scaffold0129 (16-87)||(25852-25923)
scaffold0129 (45-87)||(27247-27289)


Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 18 - 256
Target Start/End: Complemental strand, 9301142 - 9300904
Alignment:
Q  18 attatttaaagaatccattataagaaattttaccttaaaaacataagtcaaacaaatgtaaaagtaataattacacaattttttatataaaagttatcac 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9301142 attatttaaagaatccattataagaaattttaccttaaaaacataagtcaaacaaatgtaaaagtaataattacacaattttttatataaaagttatcac 9301043  T
Q  118 ttttaattgcttaaacaatacctaagagcatttgtttgcatttttcagagtaaatattaagctcttgcattgagaatgacaaacacatcaatgtccacta 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9301042 ttttaattgcttaaacaatacctaagagcatttgtttgcatttttcagagtaaatattaagctcttgcattgagaatgacaaacacatcaatgtccacta 9300943  T
Q  218 aatttttcatttgacattcaaatttaacatatatctcct 256  Q
    |||||||||||||||||||||||||||||||||||||||    
T  9300942 aatttttcatttgacattcaaatttaacatatatctcct 9300904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 46 - 132
Target Start/End: Complemental strand, 38737372 - 38737286
Alignment:
Q  46 tttaccttaaaaacataagtcaaacaaatgtaaaagtaataattacacaattttttatataaaagttatcacttttaattgcttaaa 132  Q
    |||| ||| ||||||||||||||||| ||||||||||| ||||||||||  |||||||| ||||||||| ||||| | |||||||||    
T  38737372 tttatcttgaaaacataagtcaaacacatgtaaaagtagtaattacacatgtttttatacaaaagttattactttcagttgcttaaa 38737286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 22 - 99
Target Start/End: Complemental strand, 41834877 - 41834800
Alignment:
Q  22 tttaaagaatccattataagaaattttaccttaaaaacataagtcaaacaaatgtaaaagtaataattacacaatttt 99  Q
    ||||| |||| ||||||||| |||| || |||||||| | |||||||||| || ||||||||||||||||||||||||    
T  41834877 tttaaggaattcattataagtaattgtatcttaaaaatacaagtcaaacatatataaaagtaataattacacaatttt 41834800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 51 - 136
Target Start/End: Complemental strand, 39668934 - 39668848
Alignment:
Q  51 cttaaaaacataagtcaaacaaatgtaaaagtaataattacacaatt-ttttatataaaagttatcacttttaattgcttaaacaat 136  Q
    |||||||| |||||||||| | || ||||| |||||||||||||||| ||||||| ||||||||| | ||||| |||||| ||||||    
T  39668934 cttaaaaatataagtcaaatacatataaaaataataattacacaatttttttatacaaaagttattagttttagttgcttgaacaat 39668848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 100
Target Start/End: Complemental strand, 32815268 - 32815207
Alignment:
Q  39 aagaaattttaccttaaaaacataagtcaaacaaatgtaaaagtaataattacacaattttt 100  Q
    |||| |||||| |||||||| | |||||||||| |||||||||||||||||||| |||||||    
T  32815268 aagatattttatcttaaaaatacaagtcaaacatatgtaaaagtaataattacataattttt 32815207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 96
Target Start/End: Complemental strand, 35365651 - 35365567
Alignment:
Q  12 aagaatattatttaaagaatccattataagaaattttaccttaaaaacataagtcaaacaaatgtaaaagtaataattacacaat 96  Q
    ||||| ||| |||||  ||||||| |||||||||| || ||| |||| |||||||||||| ||||||| || |||||||||||||    
T  35365651 aagaaaattgtttaagaaatccataataagaaattatatcttgaaaatataagtcaaacatatgtaaatgtcataattacacaat 35365567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 113
Target Start/End: Original strand, 42483270 - 42483333
Alignment:
Q  50 ccttaaaaacataagtcaaacaaatgtaaaagtaataattacacaattttttatataaaagtta 113  Q
    ||||||||| |||||| ||||| ||||||||||||||| ||  ||||||| |||||||||||||    
T  42483270 ccttaaaaatataagttaaacatatgtaaaagtaataaatattcaattttctatataaaagtta 42483333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 55 - 92
Target Start/End: Original strand, 2574925 - 2574962
Alignment:
Q  55 aaaacataagtcaaacaaatgtaaaagtaataattaca 92  Q
    ||||||||||||||||| ||||||| ||||||||||||    
T  2574925 aaaacataagtcaaacacatgtaaatgtaataattaca 2574962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 136
Target Start/End: Complemental strand, 13029053 - 13028992
Alignment:
Q  75 gtaaaagtaataattacacaattttttatataaaagttatcacttttaattgcttaaacaat 136  Q
    |||||||| |||| |||||||||||| || |||||||||  |||||||| | ||||||||||    
T  13029053 gtaaaagttataactacacaatttttaatgtaaaagttactacttttaaatacttaaacaat 13028992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 113
Target Start/End: Original strand, 40043330 - 40043370
Alignment:
Q  73 atgtaaaagtaataattacacaattttttatataaaagtta 113  Q
    |||||||| | |||||||||||||||| |||||||||||||    
T  40043330 atgtaaaaatcataattacacaattttctatataaaagtta 40043370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 22 - 136
Target Start/End: Original strand, 3636403 - 3636517
Alignment:
Q  22 tttaaagaatccattataagaaattttaccttaaaaacataagtcaaacaaatgtaaaagtaataattacacaattttttatataaaagttatcactttt 121  Q
    ||||| ||||| |||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||| || ||| ||  |||||||||  ||||||    
T  3636403 tttaaggaatctattataagaaattttatcttgaacacataagtcaaacaaatgtaaaagtaataattacagaagtttctaggtaaaagttactactttt 3636502  T
Q  122 aattgcttaaacaat 136  Q
    | |||||||||||||    
T  3636503 agttgcttaaacaat 3636517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 39 - 161
Target Start/End: Complemental strand, 14812373 - 14812250
Alignment:
Q  39 aagaaattttaccttaaaaacataagtcaaacaaatgtaaaagtaataattacacaattttttatataaaagttatcacttttaattgcttaaacaatac 138  Q
    ||||||||||| ||| |||| | |||||||||| |||||||||| ||||||||||||||||  || |||||||||  |||||| | |||||||||||| |    
T  14812373 aagaaattttatcttgaaaatacaagtcaaacatatgtaaaagttataattacacaattttcaatgtaaaagttaatacttttgaatgcttaaacaatgc 14812274  T
Q  139 c-taagagcatttgtttgcatttt 161  Q
    | |||| ||| ||||| |||||||    
T  14812273 cgtaagggcacttgttagcatttt 14812250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 34 - 113
Target Start/End: Complemental strand, 18375568 - 18375489
Alignment:
Q  34 attataagaaattttaccttaaaaacataagtcaaacaaatgtaaaagtaataattacacaattttttatataaaagtta 113  Q
    ||||||||||  |||| |||||||| ||||||||| || |  ||||||||||||||||| ||||||||||||||||||||    
T  18375568 attataagaatatttatcttaaaaatataagtcaagcatacataaaagtaataattacataattttttatataaaagtta 18375489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 69 - 137
Target Start/End: Original strand, 28538027 - 28538095
Alignment:
Q  69 acaaatgtaaaagtaataattacacaattttttatataaaagttatcacttttaattgcttaaacaata 137  Q
    |||||||||||||| ||||||||| |||||||  ||||||||||||  ||||||| |||||||||||||    
T  28538027 acaaatgtaaaagtcataattacataatttttattataaaagttattccttttaaatgcttaaacaata 28538095  T

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Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 38 - 119
Target Start/End: Original strand, 37528691 - 37528773
Alignment:
Q  38 taagaaattttaccttaaaaac-ataagtcaaacaaatgtaaaagtaataattacacaattttttatataaaagttatcactt 119  Q
    |||||||||||| ||||||||  ||| || ||| | ||||||||| |||||||||| |||||||||||||||| |||||||||    
T  37528691 taagaaattttatcttaaaaattataggttaaatatatgtaaaaggaataattacataattttttatataaaaattatcactt 37528773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 136
Target Start/End: Complemental strand, 1758545 - 1758460
Alignment:
Q  51 cttaaaaacataagtcaaacaaatgtaaaagtaataattacacaattttttatataaaagttatcacttttaattgcttaaacaat 136  Q
    |||||||| |||||||||||| ||||| |||| |||  |||||||||||||||  ||||||||  |||||||  ||||||||||||    
T  1758545 cttaaaaatataagtcaaacacatgtagaagtcatatctacacaattttttatgcaaaagttactacttttagatgcttaaacaat 1758460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 139
Target Start/End: Original strand, 879506 - 879590
Alignment:
Q  55 aaaacataagtcaaacaaatgtaaaagtaataattacacaattttttatataaaagttatcacttttaattgcttaaacaatacc 139  Q
    ||||||||||||||||| ||| |||||||||||| |||||  ||| |||  ||||||||  | | || |||||||||||||||||    
T  879506 aaaacataagtcaaacatatgaaaaagtaataatcacacatatttctatgcaaaagttactattattgattgcttaaacaatacc 879590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 140
Target Start/End: Complemental strand, 28489244 - 28489121
Alignment:
Q  17 tattatttaaagaatccattataagaaattttaccttaaaaacataagtcaaacaaatgtaaaagtaataattacacaattttttatataaaagttatca 116  Q
    |||| ||||||||||||   | |||||| ||||  || |||| | |||| ||||| | ||||| || ||||||||| ||||||||| |||||| |||| |    
T  28489244 tattgtttaaagaatcctcaaaaagaaactttattttgaaaatacaagttaaacataagtaaacgtcataattacataattttttaaataaaaattatta 28489145  T
Q  117 cttttaattgcttaaacaatacct 140  Q
    || || |||| |||||||||||||    
T  28489144 ctattgattgtttaaacaatacct 28489121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 39 - 161
Target Start/End: Original strand, 37331805 - 37331928
Alignment:
Q  39 aagaaattttaccttaaaaacataagtcaaacaaatgtaaaagtaataattacacaattttttatataaaagttatcacttttaattgcttaaacaata- 137  Q
    ||||||||||| |||||||| |||||||||| | || | ||| | |||||||||||||| |  ||| |||| |||  |||||||  |||||||||||||     
T  37331805 aagaaattttatcttaaaaatataagtcaaatatatattaaaatcataattacacaattgtcaatacaaaaattactacttttagatgcttaaacaatat 37331904  T
Q  138 cctaagagcatttgtttgcatttt 161  Q
    | ||| | |||||||| |||||||    
T  37331905 cttaataacatttgttagcatttt 37331928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 22 - 136
Target Start/End: Complemental strand, 49178 - 49061
Alignment:
Q  22 tttaaagaatccattataagaaattttaccttaaaaacataagtcaaacaaatgtaaaagtaa---taattacacaattttttatataaaagttatcact 118  Q
    ||||| |||||||||||||||||| ||| ||||||||||||||||||| | ||||||||||||   ||||||||||| ||| |||  |||| |||||| |    
T  49178 tttaaggaatccattataagaaatgttatcttaaaaacataagtcaaatacatgtaaaagtaataataattacacaagtttctatgcaaaaattatcatt 49079  T
Q  119 tttaattgcttaaacaat 136  Q
    |||| |||||||||||||    
T  49078 tttagttgcttaaacaat 49061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 35 - 132
Target Start/End: Complemental strand, 50783645 - 50783548
Alignment:
Q  35 ttataagaaattttaccttaaaaacataagtcaaacaaatgtaaaagtaataattacacaattttttatataaaagttatcacttttaattgcttaaa 132  Q
    ||||| ||||||||| ||| ||||||| ||||||||| ||||||||||||||||||||||| ||| |||||||||||||  ||||||| ||| |||||    
T  50783645 ttatatgaaattttatcttgaaaacattagtcaaacacatgtaaaagtaataattacacaagtttctatataaaagttactacttttagttgtttaaa 50783548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 43361913 - 43361811
Alignment:
Q  12 aagaatattatttaaagaatccattataagaaattttaccttaaaaacataagtcaaacaaatgtaaaagtaataattacacaattttttatataaaagt 111  Q
    ||||| ||| ||||| |||||||||| |||||| |||| |||||||||||||||||||||  | ||||||||||| |||||||| ||| ||| ||||| |    
T  43361913 aagaacattgtttaaggaatccattaaaagaaactttatcttaaaaacataagtcaaacacgtttaaaagtaatacttacacaaatttctatgtaaaaat 43361814  T
Q  112 tat 114  Q
    |||    
T  43361813 tat 43361811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 22 - 136
Target Start/End: Original strand, 35798985 - 35799101
Alignment:
Q  22 tttaaagaatccattataagaaattttaccttaaaaacataagtcaaacaaatgt--aaaagtaataattacacaattttttatataaaagttatcactt 119  Q
    ||||||||||||||||||||||||||||  || |||| ||| |||||||| ||||  |||||||||||||||| || ||| |||| |||| |||  ||||    
T  35798985 tttaaagaatccattataagaaattttattttgaaaatatatgtcaaacacatgtaaaaaagtaataattacaaaagtttctatacaaaaattactactt 35799084  T
Q  120 ttaattgcttaaacaat 136  Q
    ||  || ||||||||||    
T  35799085 ttggttacttaaacaat 35799101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 29 - 113
Target Start/End: Original strand, 4066403 - 4066487
Alignment:
Q  29 aatccattataagaaattttaccttaaaaacataagtcaaacaaatgtaaaagtaataattacacaattttttatataaaagtta 113  Q
    |||||||||||||||||| || ||| ||||||||||||||||| | || ||| ||||||||| |||| ||| |||  ||||||||    
T  4066403 aatccattataagaaattatatcttgaaaacataagtcaaacacacgtgaaactaataattatacaagtttctatgcaaaagtta 4066487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 45 - 95
Target Start/End: Original strand, 16530221 - 16530271
Alignment:
Q  45 ttttaccttaaaaacataagtcaaacaaatgtaaaagtaataattacacaa 95  Q
    ||||| ||| |||| |||||||||||| |||||||||||||||||||||||    
T  16530221 ttttatcttgaaaatataagtcaaacatatgtaaaagtaataattacacaa 16530271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 62 - 136
Target Start/End: Original strand, 31377597 - 31377670
Alignment:
Q  62 aagtcaaacaaatgtaaaagtaataattacacaattttttatataaaagttatcacttttaattgcttaaacaat 136  Q
    |||||||||| ||||||| || |||||||||||||||| ||| |||||||||  ||||  |||||||||||||||    
T  31377597 aagtcaaacacatgtaaa-gtcataattacacaattttctatgtaaaagttactacttcaaattgcttaaacaat 31377670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 62 - 136
Target Start/End: Complemental strand, 34461438 - 34461364
Alignment:
Q  62 aagtcaaacaaatgtaaaagtaataattacacaattttttatataaaagttatcacttttaattgcttaaacaat 136  Q
    ||||||||||||| |||| ||| |||||||| ||| ||||||| |||| ||| |||||||||||  |||||||||    
T  34461438 aagtcaaacaaatataaatgtattaattacataatcttttatacaaaaattaccacttttaattatttaaacaat 34461364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 86
Target Start/End: Original strand, 2914764 - 2914821
Alignment:
Q  29 aatccattataagaaattttaccttaaaaacataagtcaaacaaatgtaaaagtaata 86  Q
    |||||||||| || ||||||| ||| ||| ||||||||||||| ||||||||||||||    
T  2914764 aatccattattagtaattttatcttgaaagcataagtcaaacacatgtaaaagtaata 2914821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 136
Target Start/End: Original strand, 45219017 - 45219114
Alignment:
Q  39 aagaaattttaccttaaaaacataagtcaaacaaatgtaaaagtaataattacacaattttttatataaaagttatcacttttaattgcttaaacaat 136  Q
    ||||||||||  ||| |||| |||||| ||||| |||||||||| |||| ||||||||||   |||||||| |||  |||||||  ||||||||||||    
T  45219017 aagaaattttgtctttaaaatataagtaaaacatatgtaaaagtcataagtacacaatttcaaatataaaaattactacttttagatgcttaaacaat 45219114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 4512822 - 4512870
Alignment:
Q  39 aagaaattttaccttaaaaacataagtcaaacaaatgtaaaagtaataa 87  Q
    ||||||||||  ||||||||||||||||||||| |||||||||| ||||    
T  4512822 aagaaattttgtcttaaaaacataagtcaaacacatgtaaaagttataa 4512870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 137
Target Start/End: Complemental strand, 43154658 - 43154558
Alignment:
Q  37 ataagaaattttaccttaaaaacataagtcaaacaaatgtaaaagtaataattacacaattttttatataaaagttatcacttttaattgcttaaacaat 136  Q
    |||||||| ||||  ||||||  | |||||| ||| ||||||||||||||| || ||||||| | |||||||| |||| |||||||| |  |||||||||    
T  43154658 ataagaaactttattttaaaagtagaagtcagacacatgtaaaagtaataaatatacaatttctaatataaaaattattacttttaaatatttaaacaat 43154559  T
Q  137 a 137  Q
    |    
T  43154558 a 43154558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 43 - 94
Target Start/End: Complemental strand, 39985127 - 39985076
Alignment:
Q  43 aattttaccttaaaaacataagtcaaacaaatgtaaaagtaataattacaca 94  Q
    ||||||| ||||||| ||||| ||||| | ||||||||||||||||||||||    
T  39985127 aattttatcttaaaagcataaatcaaatacatgtaaaagtaataattacaca 39985076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 136
Target Start/End: Complemental strand, 11900033 - 11899959
Alignment:
Q  62 aagtcaaacaaatgtaaaagtaataattacacaattttttatataaaagttatcacttttaattgcttaaacaat 136  Q
    |||||||||| |||  ||||| |||| |||||||||||||||||||| ||||  ||||||||   ||||||||||    
T  11900033 aagtcaaacacatgcgaaagtcataactacacaattttttatataaatgttactacttttaaagacttaaacaat 11899959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 77
Target Start/End: Original strand, 21111778 - 21111822
Alignment:
Q  33 cattataagaaattttaccttaaaaacataagtcaaacaaatgta 77  Q
    ||||||||||||||||| ||| |||| |||||||||||| |||||    
T  21111778 cattataagaaattttatcttgaaaatataagtcaaacacatgta 21111822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 29 - 136
Target Start/End: Complemental strand, 35044183 - 35044076
Alignment:
Q  29 aatccattataagaaattttaccttaaaaacataagtcaaacaaatgtaaaagtaataattacacaattttttatataaaagttatcacttttaattgct 128  Q
    ||||||||||||||||||||| ||| ||||| ||||||||||| |||| |||||||||||||||||  ||| |||  |||||| |  ||||||| |||||    
T  35044183 aatccattataagaaattttatcttgaaaacctaagtcaaacacatgtgaaagtaataattacacatgtttctatgcaaaagtgactacttttagttgct 35044084  T
Q  129 taaacaat 136  Q
    ||||||||    
T  35044083 taaacaat 35044076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 137
Target Start/End: Original strand, 42225984 - 42226098
Alignment:
Q  22 tttaaagaatccattataagaaattttaccttaaaaacataagtcaaacaaatgtaaaagtaataattacacaattttttatataaaagttatcactttt 121  Q
    ||||| ||||| |||||||||||||||| ||| ||||||||| || |||| || |||||||||| ||||||||| ||| |||| ||||||||  ||||||    
T  42225984 tttaaggaatctattataagaaattttatcttgaaaacataaatctaacatatttaaaagtaat-attacacaagtttgtatacaaaagttaatactttt 42226082  T
Q  122 aattgcttaaacaata 137  Q
    | |||||||| |||||    
T  42226083 agttgcttaagcaata 42226098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 34 - 137
Target Start/End: Complemental strand, 54260036 - 54259933
Alignment:
Q  34 attataagaaattttaccttaaaaacataagtcaaacaaatgtaaaagtaataattacacaattttttatataaaagttatcacttttaattgcttaaac 133  Q
    ||||||| |||||||| ||| |||| ||||||||||| | |||||||||||||||||||  | |||| |   |||| |||||||||||| ||| ||||||    
T  54260036 attataaaaaattttatcttgaaaatataagtcaaacgagtgtaaaagtaataattacattacttttcacgcaaaaattatcacttttagttgtttaaac 54259937  T
Q  134 aata 137  Q
    ||||    
T  54259936 aata 54259933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 84
Target Start/End: Complemental strand, 46370944 - 46370882
Alignment:
Q  22 tttaaagaatccattataagaaattttaccttaaaaacataagtcaaacaaatgtaaaagtaa 84  Q
    ||||||||||| ||||||| | |||||||||| ||||||||| ||||||||||||||| ||||    
T  46370944 tttaaagaatctattataaaacattttaccttgaaaacataaatcaaacaaatgtaaaggtaa 46370882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 137
Target Start/End: Original strand, 50888867 - 50888960
Alignment:
Q  44 attttaccttaaaaacataagtcaaacaaatgtaaaagtaataattacacaattttttatataaaagttatcacttttaattgcttaaacaata 137  Q
    |||||| |||| ||| | |||||||||| |||||||||| |||| |||||||||||| |||||||| ||||   |||||| |||||||| ||||    
T  50888867 attttatcttagaaatacaagtcaaacacatgtaaaagttataactacacaatttttaatataaaaattattgtttttaaatgcttaaaaaata 50888960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 95
Target Start/End: Complemental strand, 3432518 - 3432475
Alignment:
Q  52 ttaaaaacataagtcaaacaaatgtaaaagtaataattacacaa 95  Q
    |||||||||||| |||||||||| ||||||||||||||||||||    
T  3432518 ttaaaaacataaatcaaacaaatataaaagtaataattacacaa 3432475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 67 - 137
Target Start/End: Complemental strand, 34908628 - 34908559
Alignment:
Q  67 aaacaaatgtaaaagtaataattacacaattttttatataaaagttatcacttttaattgcttaaacaata 137  Q
    ||||| ||||||||||||||| ||||||||||||||||||||  |||  || ||| |||||||||||||||    
T  34908628 aaacacatgtaaaagtaataagtacacaattttttatataaatattactac-tttgattgcttaaacaata 34908559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 52 - 113
Target Start/End: Original strand, 32208106 - 32208167
Alignment:
Q  52 ttaaaaacataagtcaaacaaatgtaaaagtaataattacacaattttttatataaaagtta 113  Q
    |||||||||||||||||||| ||| |||||||||||| |||||  ||| ||| |||||||||    
T  32208106 ttaaaaacataagtcaaacatatgaaaaagtaataatcacacatatttctatgtaaaagtta 32208167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 92
Target Start/End: Complemental strand, 7753186 - 7753111
Alignment:
Q  17 tattatttaaagaatccattataagaaattttaccttaaaaacataagtcaaacaaatgtaaaagtaataattaca 92  Q
    |||| ||||| ||||||| || || || ||||| ||| ||||||||| ||||||| || |||||||||||||||||    
T  7753186 tattgtttaaggaatccaataaaaaaagttttatcttgaaaacataaatcaaacacatataaaagtaataattaca 7753111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 103
Target Start/End: Original strand, 16144125 - 16144173
Alignment:
Q  55 aaaacataagtcaaacaaatgtaaaagtaataattacacaattttttat 103  Q
    ||||||||| ||||||| | |||||| |||||||||||||| |||||||    
T  16144125 aaaacataaatcaaacacaagtaaaaataataattacacaaatttttat 16144173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 39 - 109
Target Start/End: Original strand, 19453 - 19523
Alignment:
Q  39 aagaaattttaccttaaaaacataagtcaaacaaatgtaaaagtaataattacacaattttttatataaaa 109  Q
    ||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||    
T  19453 aagaaattttatcttgaaaacataagtcaaacacatgtaaaagtaataattacacaagtttttatacaaaa 19523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 54 - 138
Target Start/End: Original strand, 28502 - 28586
Alignment:
Q  54 aaaaacataagtcaaacaaatgtaaaagtaataattacacaattttt-tatataaaagttatcacttttaattgcttaaacaatac 138  Q
    ||||| |||||||||||| |||||||| | |||||||| |||||||| ||| ||||| | |||| ||||||||| |||||| ||||    
T  28502 aaaaatataagtcaaacacatgtaaaaattataattacgcaatttttctatgtaaaa-tgatcatttttaattgtttaaactatac 28586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 28 - 136
Target Start/End: Complemental strand, 23803468 - 23803360
Alignment:
Q  28 gaatccattataagaaattttaccttaaaaacataagtcaaacaaatgtaaaagtaataattacacaattttttatataaaagttatcacttttaattgc 127  Q
    ||||| |||||||||||||||| |||||||  |||||||||||| || ||||||||||||||| | || |||||||| ||||  ||| | ||||  ||||    
T  23803468 gaatctattataagaaattttatcttaaaattataagtcaaacacatttaaaagtaataattatataaatttttatacaaaaaatattattttttgttgc 23803369  T
Q  128 ttaaacaat 136  Q
    |||||||||    
T  23803368 ttaaacaat 23803360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 45 - 161
Target Start/End: Original strand, 37134112 - 37134228
Alignment:
Q  45 ttttaccttaaaaacataagtcaaacaaatgtaaaagtaataattacacaattttttatataaaagttatcacttttaattgcttaaacaatacctaaga 144  Q
    ||||| ||||||||||||||| ||| | |  |||||||||||||||||||| ||||||| | |||||||  | ||||| ||||||||||||||||  |||    
T  37134112 ttttatcttaaaaacataagttaaaaacaaataaaagtaataattacacaaatttttatgtgaaagttactatttttagttgcttaaacaataccggaga 37134211  T
Q  145 gcatttgtttgcatttt 161  Q
     || ||||| |||||||    
T  37134212 acacttgttagcatttt 37134228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 161
Target Start/End: Original strand, 1397886 - 1397964
Alignment:
Q  84 ataattacacaattttttatataaaagttatcacttttaattgcttaaacaat-acctaagagcatttgtttgcatttt 161  Q
    |||| |||||||||||| |||||||| |||  |||||||| ||||||||||||  ||||| | |||||||| |||||||    
T  1397886 ataactacacaatttttaatataaaaattactacttttaaatgcttaaacaatctcctaataacatttgttagcatttt 1397964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 95
Target Start/End: Complemental strand, 7723205 - 7723147
Alignment:
Q  37 ataagaaattttaccttaaaaacataagtcaaacaaatgtaaaagtaataattacacaa 95  Q
    ||||||||||||| |||||||| |||||||||||||| | |||  ||||||||| ||||    
T  7723205 ataagaaattttatcttaaaaatataagtcaaacaaaagcaaagttaataattatacaa 7723147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 98
Target Start/End: Original strand, 7712527 - 7712563
Alignment:
Q  62 aagtcaaacaaatgtaaaagtaataattacacaattt 98  Q
    ||||||||||||| ||||||| |||||||||||||||    
T  7712527 aagtcaaacaaatataaaagtgataattacacaattt 7712563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 139
Target Start/End: Complemental strand, 30965836 - 30965736
Alignment:
Q  39 aagaaattttaccttaaaaacataagtcaaacaaatgtaaaagtaataattacacaattttttatataaaagttatcacttttaattgcttaaacaatac 138  Q
    ||||||||||| ||| |||| |||| ||||||| | ||  |||| |||| |||||||||||| ||||||||| ||  ||||||   || |||||||||||    
T  30965836 aagaaattttatcttgaaaatataaatcaaacacacgttgaagtcataaatacacaatttttaatataaaagatactacttttggatgattaaacaatac 30965737  T
Q  139 c 139  Q
    |    
T  30965736 c 30965736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 45 - 136
Target Start/End: Complemental strand, 25211746 - 25211655
Alignment:
Q  45 ttttaccttaaaaacataagtcaaacaaatgtaaaagtaataattacacaattttttatataaaagttatcacttttaattgcttaaacaat 136  Q
    ||||| |||||||| ||||||  |||| |||||||| |||||||||||||| ||||||||| ||| |||  ||||||||||| |||||||||    
T  25211746 ttttatcttaaaaatataagttgaacacatgtaaaaataataattacacaaatttttatattaaaattactacttttaattgtttaaacaat 25211655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 102
Target Start/End: Original strand, 33193800 - 33193863
Alignment:
Q  39 aagaaattttaccttaaaaacataagtcaaacaaatgtaaaagtaataattacacaatttttta 102  Q
    ||||||||||| |||||||| ||||||  ||||  |||||||||||||| ||||||||||||||    
T  33193800 aagaaattttatcttaaaaatataagtataacacttgtaaaagtaataaatacacaatttttta 33193863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 25181482 - 25181530
Alignment:
Q  92 acaattttttatataaaagttatcacttttaattgcttaaacaatacct 140  Q
    |||||||| |||  |||||||||||  ||||||||||||||||||||||    
T  25181482 acaattttgtatgcaaaagttatcatatttaattgcttaaacaatacct 25181530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 135
Target Start/End: Original strand, 42409070 - 42409188
Alignment:
Q  17 tattatttaaagaatccattataagaaattttaccttaaaaacataagtcaaacaaatgtaaaagtaataattacacaattttttatataaaagttatca 116  Q
    |||| ||||| |||||||||| || ||| |||| ||| ||||||||||||||| | |||||||||||||||||| | || ||| |||  |||| |||  |    
T  42409070 tattgtttaaggaatccattaaaaaaaactttatcttgaaaacataagtcaaatacatgtaaaagtaataattatataagtttctatgcaaaaattacta 42409169  T
Q  117 cttttaattgcttaaacaa 135  Q
    |||||| ||||||||||||    
T  42409170 cttttagttgcttaaacaa 42409188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 113
Target Start/End: Complemental strand, 2072289 - 2072192
Alignment:
Q  16 atattatttaaagaatccattataagaaattttaccttaaaaacataagtcaaacaaatgtaaaagtaataattacacaattttttatataaaagtta 113  Q
    |||||||||||||||| | | | ||||||||||  ||| |||| | || ||||||| || ||||||| |||| |||||||||||| ||||||||||||    
T  2072289 atattatttaaagaatgcttaaaaagaaattttctcttgaaaatacaaatcaaacacatataaaagttataactacacaatttttaatataaaagtta 2072192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 164
Target Start/End: Original strand, 10328688 - 10328815
Alignment:
Q  39 aagaaattttaccttaaaaacataagtcaaacaaatgtaaaagtaataattacacaattttttatataaaagtt-atcacttttaattgcttaaacaat- 136  Q
    ||||||||||  |||| ||| |||||||||||| || | ||||| | |||| ||||||||||||| ||||||||  | |||||| | ||||||||||||     
T  10328688 aagaaattttgtcttacaaatataagtcaaacatatcttaaagtcacaattgcacaattttttatgtaaaagttgttaacttttgaatgcttaaacaatg 10328787  T
Q  137 acctaagagcatttgtttgcatttttca 164  Q
     | |||| ||||||||| ||||||||||    
T  10328788 tcataagcgcatttgttagcatttttca 10328815  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 55 - 120
Target Start/End: Original strand, 34505206 - 34505271
Alignment:
Q  55 aaaacataagtcaaacaaatgtaaaagtaataattacacaattttttatataaaagttatcacttt 120  Q
    |||| |||||||||||| |||||||||| ||||||| ||||||||  |||| |||||||| |||||    
T  34505206 aaaaaataagtcaaacacatgtaaaagtcataattatacaattttcaatatcaaagttattacttt 34505271  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 136
Target Start/End: Complemental strand, 13177830 - 13177756
Alignment:
Q  62 aagtcaaacaaatgtaaaagtaataattacacaattttttatataaaagttatcacttttaattgcttaaacaat 136  Q
    |||||||||| |||||||||| |||| |||| |||||   ||||||||||||  |||||| | ||||||||||||    
T  13177830 aagtcaaacacatgtaaaagtcataactacataatttccaatataaaagttactacttttgaatgcttaaacaat 13177756  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 28995918 - 28995855
Alignment:
Q  18 attatttaaagaatccattataagaaattttaccttaaaaacataagtcaaacaaatgtaaaag 81  Q
    |||||||||  ||||||||| ||||||||||| |||||||||||||| |||||| |||||||||    
T  28995918 attatttaagaaatccattaaaagaaattttatcttaaaaacataaggcaaacacatgtaaaag 28995855  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 28992640 - 28992577
Alignment:
Q  18 attatttaaagaatccattataagaaattttaccttaaaaacataagtcaaacaaatgtaaaag 81  Q
    |||||||||  ||||||||| ||||||||||| |||||||||||||| ||||||  ||||||||    
T  28992640 attatttaagaaatccattaaaagaaattttatcttaaaaacataaggcaaacacttgtaaaag 28992577  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 77 - 162
Target Start/End: Complemental strand, 19893424 - 19893338
Alignment:
Q  77 aaaagtaataattacacaattttttatataaaagttatcacttttaattgcttaaacaa-tacctaagagcatttgtttgcattttt 162  Q
    |||| |||||||||||||| ||||||| ||||| |||||| |||| |||| |||||||| | |||||  ||||||||| ||||||||    
T  19893424 aaaaataataattacacaactttttatttaaaatttatcattttttattgtttaaacaattccctaacggcatttgttagcattttt 19893338  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 95
Target Start/End: Original strand, 10803398 - 10803481
Alignment:
Q  12 aagaatattatttaaagaatccattataagaaattttaccttaaaaacataagtcaaacaaatgtaaaagtaataattacacaa 95  Q
    ||||||||| |||||  |||  ||||| |||||||||| ||| ||||||||| |||||||  | || |||||||||||||||||    
T  10803398 aagaatattgtttaagaaatttattatgagaaattttatcttgaaaacataaatcaaacatgtatataagtaataattacacaa 10803481  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 161
Target Start/End: Original strand, 8713775 - 8713920
Alignment:
Q  16 atattatttaaagaatccattataagaaattttaccttaaaaacataagtcaaacaaatgtaaaagtaataattacacaattttttatataaaagttatc 115  Q
    ||||| |||||  ||||||||| || |||||||  ||| |||| | |||||||||| || | || || |||| | |||||||| | ||| ||||||| |     
T  8713775 atattgtttaagaaatccattaaaaaaaattttgtcttgaaaatacaagtcaaacatattttaa-gtcataactgcacaatttctaatacaaaagttgtt 8713873  T
Q  116 acttttaattgcttaaacaata-cctaagagcatttgtttgcatttt 161  Q
    |||||||| ||||||||||||| ||| |||||| ||||| |||||||    
T  8713874 acttttaaatgcttaaacaatacccttagagcacttgttagcatttt 8713920  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 78 - 111
Target Start/End: Original strand, 5827148 - 5827181
Alignment:
Q  78 aaagtaataattacacaattttttatataaaagt 111  Q
    ||||| ||||||||||||||||||||||||||||    
T  5827148 aaagtcataattacacaattttttatataaaagt 5827181  T

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Target: scaffold0129 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 25923 - 25852
Alignment:
Q  16 atattatttaaagaatccattataagaaattttaccttaaaaacataagtcaaacaaatgtaaaagtaataa 87  Q
    ||||| ||||| |||||||||||||    ||||| |||||||||||||||||||||||| ||||| ||||||    
T  25923 atattgtttaaggaatccattataattttttttatcttaaaaacataagtcaaacaaatataaaaataataa 25852  T

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Target: scaffold0129; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 87
Target Start/End: Complemental strand, 27289 - 27247
Alignment:
Q  45 ttttaccttaaaaacataagtcaaacaaatgtaaaagtaataa 87  Q
    ||||||||| ||||||||||||||| |||| ||||||||||||    
T  27289 ttttaccttgaaaacataagtcaaataaatataaaagtaataa 27247  T

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