View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1715_high_157 (Length: 254)

Name: NF1715_high_157
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1715_high_157
NF1715_high_157
[»] chr1 (3 HSPs)
chr1 (9-254)||(43560742-43560987)
chr1 (10-248)||(17730179-17730417)
chr1 (10-151)||(43570028-43570167)


Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 9 - 254
Target Start/End: Original strand, 43560742 - 43560987
Alignment:
Q  9 gagaagcaaaggtatgagttctaccctatattgtatctttttcgcgaataatgctaggagaaacaatattgaactctaaagaagccagtttggctctagc 108  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43560742 gagaaacaaaggtatgagttctaccctatattgtatctttttcgcgaataatgctaggagaaacaatattgaactctaaagaagccagtttggctctagc 43560841  T
Q  109 ctttagagcttctttcaagttcgagcgaacctccataagctcggcatcggtattggtaagctcgtttttcaattcttgtttatgcatggccaagtgctca 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43560842 ctttagagcttctttcaagttcgagcgaacctccataagctcggcatcggtattggtaagctcgtttttcaattcttgtttatgcatggccaagtgctca 43560941  T
Q  209 aggctctctctaaagacttgttcagatccctccacagaactgttcc 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  43560942 aggctctctctaaagacttgttcagatccctccacagaactgttcc 43560987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 10 - 248
Target Start/End: Complemental strand, 17730417 - 17730179
Alignment:
Q  10 agaagcaaaggtatgagttctaccctatattgtatctttttcgcgaataatgctaggagaaacaatattgaactctaaagaagccagtttggctctagcc 109  Q
    |||| ||||||||| | ||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||| |||    
T  17730417 agaaacaaaggtataaattctaccctatattgtatctttttcgcgaataatggtaggagacaaaatattgaactctaaagaagccagtttggctctggcc 17730318  T
Q  110 tttagagcttctttcaagttcgagcgaacctccataagctcggcatcggtattggtaagctcgtttttcaattcttgtttatgcatggccaagtgctcaa 209  Q
    ||||||||||| |||||||| ||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||| ||| ||||    
T  17730317 tttagagcttccttcaagtttgagcgaacctccataagctcgtcatcgatatttgtaagctcgtttttcaattcttgtttatgcatggccatgtgatcaa 17730218  T
Q  210 ggctctctctaaagacttgttcagatccctccacagaac 248  Q
    ||  |||||||||||||||||||||||||||||||||||    
T  17730217 ggtgctctctaaagacttgttcagatccctccacagaac 17730179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 10 - 151
Target Start/End: Original strand, 43570028 - 43570167
Alignment:
Q  10 agaagcaaaggtatgagttctaccctatattgtatctttttcgcgaataatgctaggagaaacaatattgaactctaaagaagccagtttggctctagcc 109  Q
    |||| |||||| || |||||||||||||  |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||    
T  43570028 agaaacaaaggcataagttctaccctat--tgtatctttttcacgaataatgctaggagaaaaaatattgaactctaaagaagccagtttggctctggcc 43570125  T
Q  110 tttagagcttctttcaagttcgagcgaacctccataagctcg 151  Q
    |||||||| |||||||| ||||||||||||||||||||||||    
T  43570126 tttagagcatctttcaacttcgagcgaacctccataagctcg 43570167  T

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