View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715_high_171 (Length: 243)
Name: NF1715_high_171
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_high_171 |
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Alignment Details
Target: chr3 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 11 - 228
Target Start/End: Complemental strand, 38920466 - 38920251
Alignment:
| Q |
11 |
gaattttaaataccaatagaattgt--cattcatggtattttgataaaacctggaagaacactgtttcaatgagtttttacatggtcattaattatttta |
108 |
Q |
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| T |
38920466 |
gaattttaaataccaatagaattgtgtcattcatggtattttgaaaaaacttggaagaacactgtttcaatgagtttttacatagtcatta----tttta |
38920371 |
T |
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| Q |
109 |
atattatatcacacggcaaaaactcactcacttacgttgagagacatgataaactcatccgctgaagactaagcattatgacctcttaattgtttttggt |
208 |
Q |
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| T |
38920370 |
atattatatcacacggcaaaaacttactcacttacgttgagagacatgataaactcatccgccgaagactaagcattatgacctcttaattgtttttggt |
38920271 |
T |
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| Q |
209 |
cataatatttttatgatttc |
228 |
Q |
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| T |
38920270 |
aataatatttttatgatttc |
38920251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 182
Target Start/End: Complemental strand, 30076386 - 30076303
Alignment:
| Q |
100 |
attattttaatattatatcacacggcaaaaa-ctcactcacttacgttgagagacatgataaactcatccgctgaagactaagc |
182 |
Q |
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| T |
30076386 |
attactttaatattatatcgcatggaaaaaaactcactcacttatagtgagagacatgataaactcatccaccggagactaagc |
30076303 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 140
Target Start/End: Original strand, 6722461 - 6722506
Alignment:
| Q |
95 |
cattaattattttaatattatatcacacggcaaaaactcactcact |
140 |
Q |
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| T |
6722461 |
cattcattattttaatattatatcgcacggcacgaactcactcact |
6722506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 168
Target Start/End: Complemental strand, 1028936 - 1028868
Alignment:
| Q |
100 |
attattttaatattatatcacacggcaaaaactcactcacttacgttgagagacatgataaactcatcc |
168 |
Q |
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| T |
1028936 |
attaatttaatattatatcgcacggtaaaaacgaactcactcacagtgagaaacatgatcaactcatcc |
1028868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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