View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715_high_180 (Length: 240)
Name: NF1715_high_180
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_high_180 |
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Alignment Details
Target: chr3 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 20 - 217
Target Start/End: Complemental strand, 51938221 - 51938015
Alignment:
| Q |
20 |
ggctacccatgatccaaacccacaagaaagttatggattcttcggagatatgtcacgacgacagcagcccatcggtgaaagcccaaacaattcacgaact |
119 |
Q |
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| T |
51938221 |
ggctacccatgatccaaacccacaagaaagttatggattcttcagagatatgtcacgacgacagcagcccatcggtgaaagcccaaacaattcacgaact |
51938122 |
T |
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| Q |
120 |
tcattctctacagaagaag---------aagtcaactcctaacactcctatcagatcatcaacaacaacacaatctccctttgcctctatttctgaagag |
210 |
Q |
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| T |
51938121 |
tcattctctacagaagaagaagaacaacaagtcaactcctaacactcctatcagatcatcaacaacaacacaatctccctttgcctctatttctgaagag |
51938022 |
T |
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| Q |
211 |
gaacgcc |
217 |
Q |
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||||||| |
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| T |
51938021 |
gaacgcc |
51938015 |
T |
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