View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1715_high_184 (Length: 239)

Name: NF1715_high_184
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1715_high_184
NF1715_high_184
[»] chr7 (7 HSPs)
chr7 (1-224)||(39538411-39538633)
chr7 (113-224)||(39365637-39365748)
chr7 (138-219)||(39337992-39338073)
chr7 (154-224)||(39547927-39547997)
chr7 (138-219)||(39564765-39564846)
chr7 (175-221)||(39589693-39589739)
chr7 (9-71)||(39338354-39338416)
[»] chr2 (2 HSPs)
chr2 (115-158)||(39350258-39350301)
chr2 (110-156)||(10231798-10231844)
[»] chr5 (2 HSPs)
chr5 (39-96)||(36639762-36639819)
chr5 (109-157)||(16297317-16297365)
[»] chr1 (1 HSPs)
chr1 (104-157)||(16979579-16979632)


Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 39538411 - 39538633
Alignment:
Q  1 taaatatgttttatactatcaatcaattataaccgttagatcattaggaacgtgtaagtttaattataacttcttctatagtcacacatatgattgaaag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  39538411 taaatatgttttatactatcaatcaattataaccgttagatcattaggaacgtgtaagttta-ttataacttcttctatagtcacacatatgattgaaag 39538509  T
Q  101 aagtttgctgacagtgtaaaacttttaacacaggcaatgtatcaaaattaaactctttatttattcggtttctacattacctgtggcatgtctacagaat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39538510 aagtttgctgacagtgtaaaacttttaacacaggcaatgtatcaaaattaaactctttatttattcggtttctacattacctgtggcatgtctacagaat 39538609  T
Q  201 atgaaactttatcaaaggtgattg 224  Q
    ||||||||| ||||||||||||||    
T  39538610 atgaaacttcatcaaaggtgattg 39538633  T

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Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 113 - 224
Target Start/End: Complemental strand, 39365748 - 39365637
Alignment:
Q  113 agtgtaaaacttttaacacaggcaatgtatcaaaattaaactctttatttattcggtttctacattacctgtggcatgtctacagaatatgaaactttat 212  Q
    |||||||||||||||||||   || |||||||| | | |||||||| |||||||||||| || |||||||||||||||||||||||||||||||||| ||    
T  39365748 agtgtaaaacttttaacactaacagtgtatcaagacttaactctttttttattcggtttgtagattacctgtggcatgtctacagaatatgaaacttcat 39365649  T
Q  213 caaaggtgattg 224  Q
    ||||||||||||    
T  39365648 caaaggtgattg 39365637  T

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Target: chr7; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 138 - 219
Target Start/End: Complemental strand, 39338073 - 39337992
Alignment:
Q  138 tgtatcaaaattaaactctttatttattcggtttctacattacctgtggcatgtctacagaatatgaaactttatcaaaggt 219  Q
    |||||| ||||| |||| |||||| | | ||||||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  39338073 tgtatcgaaatttaactttttattcaattggtttctacattacctgtggcatgtctacagaatatgtaacttcatcaaaggt 39337992  T

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Target: chr7; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 154 - 224
Target Start/End: Original strand, 39547927 - 39547997
Alignment:
Q  154 tctttatttattcggtttctacattacctgtggcatgtctacagaatatgaaactttatcaaaggtgattg 224  Q
    |||||| ||| | ||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||    
T  39547927 tctttacttaattggtttctacatcacctgtggcatgtctacagaatatgtaacttcatcaaaggtgattg 39547997  T

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Target: chr7; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 138 - 219
Target Start/End: Original strand, 39564765 - 39564846
Alignment:
Q  138 tgtatcaaaattaaactctttatttattcggtttctacattacctgtggcatgtctacagaatatgaaactttatcaaaggt 219  Q
    |||||||||||| || | || ||| ||| ||||||||||||||||||||||||||||| ||||||| ||||| |||||||||    
T  39564765 tgtatcaaaatttaaattttcattcatttggtttctacattacctgtggcatgtctacggaatatgtaacttcatcaaaggt 39564846  T

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Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 175 - 221
Target Start/End: Original strand, 39589693 - 39589739
Alignment:
Q  175 cattacctgtggcatgtctacagaatatgaaactttatcaaaggtga 221  Q
    |||||||||||||||||||||||||||||  |||| |||||||||||    
T  39589693 cattacctgtggcatgtctacagaatatgttacttcatcaaaggtga 39589739  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 71
Target Start/End: Complemental strand, 39338416 - 39338354
Alignment:
Q  9 ttttatactatcaatcaattataaccgttagatcattaggaacgtgtaagtttaattataact 71  Q
    |||||||||||||||||||||||| ||| | |||||||| ||| | |||  ||||||||||||    
T  39338416 ttttatactatcaatcaattataatcgtcaaatcattagaaacatttaacattaattataact 39338354  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 158
Target Start/End: Original strand, 39350258 - 39350301
Alignment:
Q  115 tgtaaaacttttaacacaggcaatgtatcaaaattaaactcttt 158  Q
    |||||||||||| |||||| || |||||||||||||||||||||    
T  39350258 tgtaaaactttttacacagacattgtatcaaaattaaactcttt 39350301  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 156
Target Start/End: Complemental strand, 10231844 - 10231798
Alignment:
Q  110 gacagtgtaaaacttttaacacaggcaatgtatcaaaattaaactct 156  Q
    ||||||||||||||||| |||| | |||| |||||||||||||||||    
T  10231844 gacagtgtaaaactttttacactgacaatatatcaaaattaaactct 10231798  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 96
Target Start/End: Complemental strand, 36639819 - 36639762
Alignment:
Q  39 gatcattaggaacgtgtaagtttaattataacttcttctatagtcacacatatgattg 96  Q
    |||||||| |||||| | | |||||| |||||| |||||| |||||||||||||||||    
T  36639819 gatcattaagaacgtttcaatttaatcataactacttctaaagtcacacatatgattg 36639762  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 157
Target Start/End: Complemental strand, 16297365 - 16297317
Alignment:
Q  109 tgacagtgtaaaacttttaacacaggcaatgtatcaaaattaaactctt 157  Q
    |||||||||||||||||| | ||  ||| ||||||||||||||||||||    
T  16297365 tgacagtgtaaaactttttaaacccgcagtgtatcaaaattaaactctt 16297317  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 157
Target Start/End: Complemental strand, 16979632 - 16979579
Alignment:
Q  104 tttgctgacagtgtaaaacttttaacacaggcaatgtatcaaaattaaactctt 157  Q
    |||| |||||||||||| ||||| |||| | || ||||||||||||||||||||    
T  16979632 tttgttgacagtgtaaatctttttacactgacagtgtatcaaaattaaactctt 16979579  T

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