View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1715_high_186 (Length: 238)

Name: NF1715_high_186
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1715_high_186
NF1715_high_186
[»] chr2 (4 HSPs)
chr2 (1-222)||(39275210-39275431)
chr2 (39-199)||(20936091-20936251)
chr2 (39-199)||(20954332-20954492)
chr2 (39-201)||(20924479-20924641)
[»] chr1 (12 HSPs)
chr1 (41-200)||(3374067-3374226)
chr1 (49-200)||(3366361-3366512)
chr1 (44-201)||(3363966-3364123)
chr1 (41-198)||(3380195-3380352)
chr1 (44-216)||(2947194-2947363)
chr1 (47-114)||(3217166-3217233)
chr1 (41-199)||(4333560-4333718)
chr1 (63-216)||(3353325-3353475)
chr1 (46-131)||(2007913-2007998)
chr1 (44-201)||(2020980-2021137)
chr1 (42-114)||(1794136-1794208)
chr1 (45-137)||(3342696-3342788)
[»] chr4 (1 HSPs)
chr4 (45-212)||(21238858-21239025)


Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 39275431 - 39275210
Alignment:
Q  1 aaccgaacaagtttggtcaacaaatcggctctggcgtattcaacaggcttcacaatcattttttctagcataggagaatacatgagaagaaatttgataa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39275431 aaccgaacaagtttggtcaacaaatcggctctggcgtattcaacaggcttcacaatcattttttctagcataggagaatacatgagaagaaatttgataa 39275332  T
Q  101 aatctaattcagatttgatgccagcgatgccacctatgcccacatgtcgaacttggatgggcatggctggccctgaaaaggtatcttcccaacaatagga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39275331 aatctaattcagatttgatgccagcgatgccacctatgcccacatgtcgaacttggatgggcatggctggccctgaaaaggtatcttcccaacaatagga 39275232  T
Q  201 gcccagtgttaaatggacatcc 222  Q
    ||||||||||||||||||||||    
T  39275231 gcccagtgttaaatggacatcc 39275210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 39 - 199
Target Start/End: Complemental strand, 20936251 - 20936091
Alignment:
Q  39 ttcaacaggcttcacaatcattttttctagcataggagaatacatgagaagaaatttgataaaatctaattcagatttgatgccagcgatgccacctatg 138  Q
    |||||||||||||||| |||| |||||||||| ||||||||| |  || |||||||||||||||||||||||  ||||| | |||  ||||||| ||||     
T  20936251 ttcaacaggcttcacagtcatcttttctagcacaggagaatatagaagtagaaatttgataaaatctaattccaatttgttaccaaagatgccatctatc 20936152  T
Q  139 cccacatgtcgaacttggatgggcatggctggccctgaaaaggtatcttcccaacaatagg 199  Q
      ||||||||| ||| | ||||||||||||||| | |||||| | | ||||||||||||||    
T  20936151 gtcacatgtcgcactcgaatgggcatggctggcgccgaaaagattttttcccaacaatagg 20936091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 39 - 199
Target Start/End: Complemental strand, 20954492 - 20954332
Alignment:
Q  39 ttcaacaggcttcacaatcattttttctagcataggagaatacatgagaagaaatttgataaaatctaattcagatttgatgccagcgatgccacctatg 138  Q
    |||||||||||||| | |||| ||||||||||| |||||||| |  || |||||||||||||||||||||||  | ||| | |||  ||||||| | ||     
T  20954492 ttcaacaggcttcagagtcatcttttctagcatgggagaatatagaagtagaaatttgataaaatctaattccaaattggtaccaaagatgccatcaatc 20954393  T
Q  139 cccacatgtcgaacttggatgggcatggctggccctgaaaaggtatcttcccaacaatagg 199  Q
     |||||||||| ||||| ||||||||||||||  | |||||  ||||||||||||||||||    
T  20954392 gccacatgtcgcacttgaatgggcatggctggtgccgaaaatatatcttcccaacaatagg 20954332  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 201
Target Start/End: Complemental strand, 20924641 - 20924479
Alignment:
Q  39 ttcaacaggcttcacaatcattttttctagcataggagaatacatgagaagaaatttgataaaatctaattcagatttgatgccagcgatgccacctatg 138  Q
    ||||||||||| ||||||||| ||||  |||| ||| ||||| |  || |||||| ||||||||||||||||||||||| | |||| |||| |   |||     
T  20924641 ttcaacaggctccacaatcatctttttgagcacaggtgaatagagaagtagaaatctgataaaatctaattcagatttggtaccagagatgtcttgtatc 20924542  T
Q  139 cccacatgtcgaacttggatgggcatggctggccctgaaaaggtatcttcccaacaataggag 201  Q
     |||||||| | | || || | ||||  ||||| | |||||| ||||||||||||||||||||    
T  20924541 tccacatgttgcaatttgaggagcatatctggctccgaaaagatatcttcccaacaataggag 20924479  T

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Target: chr1 (Bit Score: 64; Significance: 4e-28; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 41 - 200
Target Start/End: Complemental strand, 3374226 - 3374067
Alignment:
Q  41 caacaggcttcacaatcattttttctagcataggagaatacatgagaagaaatttgataaaatctaattcagatttgatgccagcgatgccacctatgcc 140  Q
    ||||| ||||||||||||| |||||||||| |||||||||    || |||||    |||||||||||||| ||| |||| |||| ||||||| ||||       
T  3374226 caacatgcttcacaatcatcttttctagcacaggagaatatcgaagtagaaaccgaataaaatctaattctgatctgataccagagatgccatctattgt 3374127  T
Q  141 cacatgtcgaacttggatgggcatggctggccctgaaaaggtatcttcccaacaatagga 200  Q
    ||||||| | ||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  3374126 cacatgttgtacttgaatgggcatggctggccctgaaaagatatcttcccaacaatagga 3374067  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 49 - 200
Target Start/End: Complemental strand, 3366512 - 3366361
Alignment:
Q  49 ttcacaatcattttttctagcataggagaatacatgagaagaaatttgataaaatctaattcagatttgatgccagcgatgccacctatgcccacatgtc 148  Q
    ||||||||||| || |||||||||||||||||    || |||||    |||||||||| ||| |||||||| |||| ||||||| ||||   ||||||||    
T  3366512 ttcacaatcatcttgtctagcataggagaatagcgaagtagaaaccgaataaaatctagttccgatttgataccagagatgccatctattgtcacatgtc 3366413  T
Q  149 gaacttggatgggcatggctggccctgaaaaggtatcttcccaacaatagga 200  Q
    | ||| | |||||||||||||||||||||||| |||||| | ||||||||||    
T  3366412 gcactcgaatgggcatggctggccctgaaaagatatcttacgaacaatagga 3366361  T

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Target: chr1; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 44 - 201
Target Start/End: Complemental strand, 3364123 - 3363966
Alignment:
Q  44 caggcttcacaatcattttttctagcataggagaatacatgagaagaaatttgataaaatctaattcagatttgatgccagcgatgccacctatgcccac 143  Q
    |||||| ||||||||| |||||||| | ||||||||| |  || |||||| |||||||||||||||||||||| | ||||| |||||||   || | |||    
T  3364123 caggctccacaatcatcttttctagtacaggagaatataaaagcagaaatctgataaaatctaattcagatttaaagccagagatgccatgcatcctcac 3364024  T
Q  144 atgtcgaacttggatgggcatggctggccctgaaaaggtatcttcccaacaataggag 201  Q
    |||||| ||||  |||||||| | |||| | |||||  ||| ||||||||||||||||    
T  3364023 atgtcgcacttcaatgggcattgttggctccgaaaatatattttcccaacaataggag 3363966  T

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Target: chr1; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 41 - 198
Target Start/End: Complemental strand, 3380352 - 3380195
Alignment:
Q  41 caacaggcttcacaatcattttttctagcataggagaatacatgagaagaaatttgataaaatctaattcagatttgatgccagcgatgccacctatgcc 140  Q
    ||||| ||||||||||||| |||||||||||||||||||| |  || |||||    |||||||||||||| |||||||| |||| |||| || ||||       
T  3380352 caacatgcttcacaatcatcttttctagcataggagaatagagaagtagaaaccgaataaaatctaattccgatttgataccagagatgtcatctattgt 3380253  T
Q  141 cacatgtcgaacttggatgggcatggctggccctgaaaaggtatcttcccaacaatag 198  Q
    ||||||||| ||| | |||||  || |||||| ||||||| || ||||||||||||||    
T  3380252 cacatgtcgcactcgaatgggattgactggccttgaaaagataacttcccaacaatag 3380195  T

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Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 44 - 216
Target Start/End: Original strand, 2947194 - 2947363
Alignment:
Q  44 caggcttcacaatcattttttctagcataggagaatacatgagaagaaatttgataaaatctaattcagatttgatgccagcgatgccacctatgcccac 143  Q
    |||||| ||||||||  ||||||||||| |||||||  |  ||||||||| ||||||||||||||||||||||||| ||||  |||   ||||||| |||    
T  2947194 caggctccacaatcaccttttctagcattggagaatgtagaagaagaaatctgataaaatctaattcagatttgataccagaaatg---cctatgctcac 2947290  T
Q  144 atgtcgaacttggatgggcatggctggccctgaaaaggtatcttcccaacaataggagcccagtgttaaatgg 216  Q
     ||| | |||  || |||||||| |||  | |||||  |||||| ||||||||||||| |  |||||||||||    
T  2947291 gtgttgcactccgaggggcatggatggatccgaaaatatatctttccaacaataggaggcgggtgttaaatgg 2947363  T

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Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 47 - 114
Target Start/End: Original strand, 3217166 - 3217233
Alignment:
Q  47 gcttcacaatcattttttctagcataggagaatacatgagaagaaatttgataaaatctaattcagat 114  Q
    |||||||  |||| ||||||||||| ||||||||||| || |||||| ||||||||||||||||||||    
T  3217166 gcttcaccgtcatcttttctagcatgggagaatacataagtagaaatctgataaaatctaattcagat 3217233  T

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Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 41 - 199
Target Start/End: Original strand, 4333560 - 4333718
Alignment:
Q  41 caacaggcttcacaatcattttttctagcataggagaatacatgagaagaaatttgataaaatctaattcagatttgatgccagcgatgccacctatgcc 140  Q
    ||||||||||||||||||| ||||||||||   ||||||| |  || |||||| |||| |||| ||||||||| | | | |||| ||||||| ||||       
T  4333560 caacaggcttcacaatcatcttttctagcaccagagaatatagaagtagaaatctgatcaaatttaattcagactgggtaccagagatgccatctatcgt 4333659  T
Q  141 cacatgtcgaacttggatgggcatggctggccctgaaaaggtatcttcccaacaatagg 199  Q
    ||||||||| ||| |||  |||||| |  ||| |||| || ||||||||||||||||||    
T  4333660 cacatgtcgcactcggaatggcatgaccagccttgaagagatatcttcccaacaatagg 4333718  T

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Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 216
Target Start/End: Complemental strand, 3353475 - 3353325
Alignment:
Q  63 ttctagcataggagaatacatgagaagaaatttgataaaatctaattcagatttgatgccagcgatgccacctatgcccacatgtcgaacttggatgggc 162  Q
    ||||||||| |||||||  |  ||||||||| ||||||||||||||||||||||||| ||||  |||   ||||||| ||| ||| | |||  || ||||    
T  3353475 ttctagcattggagaatgtagaagaagaaatctgataaaatctaattcagatttgataccagaaatg---cctatgctcacgtgttgcactccgaggggc 3353379  T
Q  163 atggctggccctgaaaaggtatcttcccaacaataggagcccagtgttaaatgg 216  Q
    |||| |||  | |||||  |||||| ||||||||||||| |  |||||||||||    
T  3353378 atggatggatccgaaaatatatctttccaacaataggaggcgggtgttaaatgg 3353325  T

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Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 131
Target Start/End: Complemental strand, 2007998 - 2007913
Alignment:
Q  46 ggcttcacaatcattttttctagcataggagaatacatgagaagaaatttgataaaatctaattcagatttgatgccagcgatgcc 131  Q
    ||||||||  |||| |||||||||| ||| ||||  |  || |||||| | |||||||||||||||||||||||||||| ||||||    
T  2007998 ggcttcactctcatcttttctagcacaggcgaatggagaagtagaaatctcataaaatctaattcagatttgatgccagagatgcc 2007913  T

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Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 201
Target Start/End: Complemental strand, 2021137 - 2020980
Alignment:
Q  44 caggcttcacaatcattttttctagcataggagaatacatgagaagaaatttgataaaatctaattcagatttgatgccagcgatgccacctatgcccac 143  Q
    ||||||||||   ||| |||||||||||||| ||||| |  || |||||| | | |||||||||||||| ||| || |||| ||||||  | || | |||    
T  2021137 caggcttcacttccatcttttctagcataggcgaatagagaagtagaaatctcaaaaaatctaattcagctttcataccagagatgccttcaatacacac 2021038  T
Q  144 atgtcgaacttggatgggcatggctggccctgaaaaggtatcttcccaacaataggag 201  Q
    |||||  ||||||||||| |||| |||| |  |||||  || ||||||||||||||||    
T  2021037 atgtcacacttggatgggtatggatggctccaaaaagacattttcccaacaataggag 2020980  T

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Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 114
Target Start/End: Complemental strand, 1794208 - 1794136
Alignment:
Q  42 aacaggcttcacaatcattttttctagcataggagaatacatgagaagaaatttgataaaatctaattcagat 114  Q
    ||||||||||||| |||| | |||||| | ||||||||| |  || |||||| ||||||||||||||||||||    
T  1794208 aacaggcttcacagtcatatgttctaggacaggagaatatagaagtagaaatctgataaaatctaattcagat 1794136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 137
Target Start/End: Complemental strand, 3342788 - 3342696
Alignment:
Q  45 aggcttcacaatcattttttctagcataggagaatacatgagaagaaatttgataaaatctaattcagatttgatgccagcgatgccacctat 137  Q
    ||||||||| | ||| ||||||||   ||||||||| |  || ||||||| |||||||||||||||||||||| | |||| ||||||| ||||    
T  3342788 aggcttcacgaacatcttttctagatcaggagaatatagaagtagaaattggataaaatctaattcagatttggtaccagagatgccatctat 3342696  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 212
Target Start/End: Complemental strand, 21239025 - 21238858
Alignment:
Q  45 aggcttcacaatcattttttctagcataggagaatacatgagaagaaatttgataaaatctaattcagatttgatgccagcgatgccacctatgcccaca 144  Q
    |||||||||| |||| ||||||| |||||||||||  |  || |||||| ||||||||||||| |||||||  |  |||| |||     ||||    |||    
T  21239025 aggcttcacagtcatcttttctaacataggagaattgagaagtagaaatctgataaaatctaactcagattgaaaaccagagattatgtctattgttaca 21238926  T
Q  145 tgtcgaacttggatgggcatggctggccctgaaaaggtatcttcccaacaataggagcccagtgttaa 212  Q
    ||| | |||| || ||||||| ||||||  |||||| |||||||||||||||||||| || |||||||    
T  21238925 tgttgcactttgaggggcatgtctggccgggaaaagatatcttcccaacaataggaggccggtgttaa 21238858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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