View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715_high_187 (Length: 238)
Name: NF1715_high_187
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_high_187 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 19 - 238
Target Start/End: Original strand, 26969670 - 26969889
Alignment:
| Q |
19 |
tgttgttgggtctcttttgccaactacggcttctcttgcattctcgtaggtgtcctgaacagccttcatcactgatccaattacaccgggcttctcttga |
118 |
Q |
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| T |
26969670 |
tgttgttgggtcccttttgccaactacagcttctcttgcattctcgtaggtgtcatgaacagccttcatcactgaaccaattacaccgggcttctcttga |
26969769 |
T |
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| Q |
119 |
tcatgttgttcttttgttacactga-tttcttcaacgtgtcttggttgttttgatgccatttgaagaagaagaattaatgtagctttagtttttgttgtg |
217 |
Q |
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| T |
26969770 |
tcatgttgttcttttgtta-actgattttcttcaacgtgtcttggttgttttgatcccatttgaagaagaagaattaatgtagctttagtttttgttgtg |
26969868 |
T |
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| Q |
218 |
tttttcttttctagtaagata |
238 |
Q |
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| T |
26969869 |
tgtttcttttctagtaagata |
26969889 |
T |
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