View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1715_high_188 (Length: 238)

Name: NF1715_high_188
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1715_high_188
NF1715_high_188
[»] scaffold0341 (3 HSPs)
scaffold0341 (19-238)||(11928-12147)
scaffold0341 (19-146)||(4272-4399)
scaffold0341 (168-238)||(4452-4522)
[»] chr1 (6 HSPs)
chr1 (19-238)||(6510248-6510467)
chr1 (19-146)||(6502594-6502721)
chr1 (19-235)||(6497262-6497481)
chr1 (168-238)||(6502773-6502843)
chr1 (20-97)||(6514613-6514690)
chr1 (151-235)||(6514779-6514863)


Alignment Details
Target: scaffold0341 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 19 - 238
Target Start/End: Original strand, 11928 - 12147
Alignment:
Q  19 cgtgaatcattgtttaatatcgagtctatgatatttgttgcagtcccttccttccaatttctccatgcctgcacaaatttacccaaatgcaaatactact 118  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11928 cgtgaatcattgtttaatgtcgagtctatgatatttgttgcagtcccttccttccaatttctccatgcctgcacaaatttacccaaatgcaaatactact 12027  T
Q  119 ctttgttagatataatttcacttctaaagatgaaagatatgacgacatgaaaagtatgacttacaaagcttgagagatattctgtattctccccatcacg 218  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12028 ctttgttagatataatttcacttctaaacatgaaagatatgacgacatgaaaagtatgacttacaaagcttgagagatattctgtattctccccatcacg 12127  T
Q  219 aatgccactgttttttgcac 238  Q
    ||||||||||||||||||||    
T  12128 aatgccactgttttttgcac 12147  T

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Target: scaffold0341; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 19 - 146
Target Start/End: Original strand, 4272 - 4399
Alignment:
Q  19 cgtgaatcattgtttaatatcgagtctatgatatttgttgcagtcccttccttccaatttctccatgcctgcacaaatttacccaaatgcaaatactact 118  Q
    |||||||||||||||||| |||||||||||||||||||||||||||| ||  |||||||||||||||||| |||||||||| ||| ||||| |||  | |    
T  4272 cgtgaatcattgtttaatgtcgagtctatgatatttgttgcagtcccctctctccaatttctccatgcctacacaaatttatccagatgcatatatcatt 4371  T
Q  119 ctttgttagatataatttcacttctaaa 146  Q
    || |||||||||||||| ||||||||||    
T  4372 ctatgttagatataattccacttctaaa 4399  T

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Target: scaffold0341; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 168 - 238
Target Start/End: Original strand, 4452 - 4522
Alignment:
Q  168 aaaagtatgacttacaaagcttgagagatattctgtattctccccatcacgaatgccactgttttttgcac 238  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||    
T  4452 aaaattatgacttacaaagcttgagagatattctgtattctccccatcacgaatgctactatttttagcac 4522  T

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Target: chr1 (Bit Score: 180; Significance: 2e-97; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 19 - 238
Target Start/End: Original strand, 6510248 - 6510467
Alignment:
Q  19 cgtgaatcattgtttaatatcgagtctatgatatttgttgcagtcccttccttccaatttctccatgcctgcacaaatttacccaaatgcaaatactact 118  Q
    |||||||||||||||||  | || ||||||||| |||||||||| || ||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  6510248 cgtgaatcattgtttaaagtagaatctatgataattgttgcagtaccatcaatccaatttctccatgcctgcacaaatttacccaaatgcaaatactact 6510347  T
Q  119 ctttgttagatataatttcacttctaaagatgaaagatatgacgacatgaaaagtatgacttacaaagcttgagagatattctgtattctccccatcacg 218  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6510348 ctttgttagatataatttcacttctaaacatgaaagatatgacgacatgaaaagtatgacttacaaagcttgagagatattctgtattctccccatcacg 6510447  T
Q  219 aatgccactgttttttgcac 238  Q
    ||||||||||||||||||||    
T  6510448 aatgccactgttttttgcac 6510467  T

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Target: chr1; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 19 - 146
Target Start/End: Original strand, 6502594 - 6502721
Alignment:
Q  19 cgtgaatcattgtttaatatcgagtctatgatatttgttgcagtcccttccttccaatttctccatgcctgcacaaatttacccaaatgcaaatactact 118  Q
    |||||||||||||||||| |||||||||||||||||||||||||||| ||  |||||||||||||||||| |||||||||| ||| ||||| |||  | |    
T  6502594 cgtgaatcattgtttaatgtcgagtctatgatatttgttgcagtcccctctctccaatttctccatgcctacacaaatttatccagatgcatatatcatt 6502693  T
Q  119 ctttgttagatataatttcacttctaaa 146  Q
    || |||||||||||||| ||||||||||    
T  6502694 ctatgttagatataattccacttctaaa 6502721  T

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Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 19 - 235
Target Start/End: Original strand, 6497262 - 6497481
Alignment:
Q  19 cgtgaatcattgtttaatatcgagtctatgatatttgttgcagtcccttccttccaatttctccatgcctgcacaaatttacccaaatgcaaatactact 118  Q
    |||||||||||||||||  | |  ||||||||| |||||||||| || ||||||||||| ||||||||||||||||||||  ||||| |||||||  |      
T  6497262 cgtgaatcattgtttaacgtgggatctatgatacttgttgcagttccctccttccaattcctccatgcctgcacaaatttgtccaaacgcaaataaaata 6497361  T
Q  119 ctttgttagatataatttcacttctaaagatgaaagatat------gacgacatgaaaagtatgacttacaaagcttgagagatattctgtattctcccc 212  Q
    ||  ||||||||||| | |||||||  | |||||| ||||      || ||||| ||||||||||||||||||||| || ||||| || ||||||||| |    
T  6497362 ctaggttagatataa-tacacttct--acatgaaatatatgatgacgatgacataaaaagtatgacttacaaagctcgatagatactcagtattctcctc 6497458  T
Q  213 atcacgaatgccactgttttttg 235  Q
    ||| |||||||||||||||||||    
T  6497459 atcgcgaatgccactgttttttg 6497481  T

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Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 168 - 238
Target Start/End: Original strand, 6502773 - 6502843
Alignment:
Q  168 aaaagtatgacttacaaagcttgagagatattctgtattctccccatcacgaatgccactgttttttgcac 238  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||    
T  6502773 aaaattatgacttacaaagcttgagagatattctgtattctccccatcacgaatgctactatttttagcac 6502843  T

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Target: chr1; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 6514613 - 6514690
Alignment:
Q  20 gtgaatcattgtttaatatcgagtctatgatatttgttgcagtcccttccttccaatttctccatgcctgcacaaatt 97  Q
    |||| |||||||||||| | |  ||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||    
T  6514613 gtgagtcattgtttaatgttggatctatgatatttgctgcagtcccctccttccaatttctccatgcctacacaaatt 6514690  T

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Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 151 - 235
Target Start/End: Original strand, 6514779 - 6514863
Alignment:
Q  151 aaagatatgacgacatgaaaagtatgacttacaaagcttgagagatattctgtattctccccatcacgaatgccactgttttttg 235  Q
    ||||||||||   ||||| || |||||||||||||||| ||||||||||| ||||||||||||||||| |||  ||| |||||||    
T  6514779 aaagatatgattgcatgacaattatgacttacaaagctcgagagatattccgtattctccccatcacggatgtaactattttttg 6514863  T

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