View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715_high_190 (Length: 237)
Name: NF1715_high_190
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_high_190 |
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Alignment Details
Target: chr3 (Bit Score: 144; Significance: 7e-76; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 36907492 - 36907273
Alignment:
| Q |
1 |
gtccacaaatcaagtgcttgacgataagatttgtaagnnnnnnntgcttcacaacatgaagatcgcttcttctatcttacgcactccatctcaaatcata |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||||||| ||||||||||||||||||| |
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| T |
36907492 |
gtccacaaatcaagtgcttgacgataagatttgtaagaaaaaaat-cttcacaacatgaatatcgcttcttctatcttagtcactccatctcaaatcata |
36907394 |
T |
|
| Q |
101 |
agtcgttttgaaaaaattgttgcaaaatattatttctttataataccaaaacattaaatattannnnnnnnaattatacccttaactatttctaattatt |
200 |
Q |
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|||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
36907393 |
agtcgttttgaaaaaattgtcgcaaaatattatttctttacaataccaaaacattaaatatta-ttttttcaattatacccttaactatttctaattatt |
36907295 |
T |
|
| Q |
201 |
tatcactctttctatttttaat |
222 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
36907294 |
tatcactctttctatttttaat |
36907273 |
T |
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