View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1715_high_194 (Length: 235)
Name: NF1715_high_194
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_high_194 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 17723000 - 17723219
Alignment:
| Q |
1 |
tgcatggaactgacagctaccttggtgatgatcattatttatttcggaagaaactatctatacataattggtgattatgttgactgttatttctttgaat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17723000 |
tgcatggaactgacagctaccttggtgatgatcattatttagtttggaagaaactatctatacataattggtgattatgttgactgttatttctttgaat |
17723099 |
T |
|
| Q |
101 |
caggagagaatgtgacaagtaggtgtggaaatacgacgtgctaggtggccatactgttaagataggttattcgatattacactagaacgtgtacagttcc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
17723100 |
gaggagagaatgtgacaagtaggtgtggaaatacgatgtgctaggtggccatactgttaagataggttattcgatattacactagaatgcgtacagttcc |
17723199 |
T |
|
| Q |
201 |
gaatacgatgctgaagttgg |
220 |
Q |
| |
|
|||||||||| ||||||||| |
|
|
| T |
17723200 |
gaatacgatgatgaagttgg |
17723219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 19024229 - 19024448
Alignment:
| Q |
1 |
tgcatggaactgacagctaccttggtgatgatcattatttatttcggaagaaactatctatacataattggtgattatgttgactgttatttctttgaat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19024229 |
tgcatggaactgacagctaccttggtgatgatcattatttagtttggaagaaactatctatacataattggtgattatgttgactgttatttctttgaat |
19024328 |
T |
|
| Q |
101 |
caggagagaatgtgacaagtaggtgtggaaatacgacgtgctaggtggccatactgttaagataggttattcgatattacactagaacgtgtacagttcc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
19024329 |
gaggagagaatgtgacaagtaggtgtggaaatacgatgtgctaggtggccatactgttaagataggttattcgatattacactagaatgcgtacagttcc |
19024428 |
T |
|
| Q |
201 |
gaatacgatgctgaagttgg |
220 |
Q |
| |
|
|||||||||| ||||||||| |
|
|
| T |
19024429 |
gaatacgatgatgaagttgg |
19024448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 3 - 196
Target Start/End: Complemental strand, 18113956 - 18113765
Alignment:
| Q |
3 |
catggaactgacagctaccttggtgatgatcattatttatttcggaagaaactatctatacataattggtgattatgttgactgttatttctttgaatca |
102 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||||| || |||||||||||||| || ||||||| ||||||||||||||||||||||||||| ||| |
|
|
| T |
18113956 |
catggaactgacagctaccttggcgacgatcattatttagttgggaagaaactatctgtatataattg-tgattatgttgactgttatttctttga-tca |
18113859 |
T |
|
| Q |
103 |
ggagagaatgtgacaagtaggtgtggaaatacgacgtgctaggtggccatactgttaagataggttattcgatattacactagaacgtgtacag |
196 |
Q |
| |
|
||||||| |||||| || ||||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||| |||||| |||||| |
|
|
| T |
18113858 |
agagagaaagtgacacatatgtgtggaaatacgacgtgctaggtggctatactgttaaggcaggttattcggcattacaccagaacgcgtacag |
18113765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 104 - 196
Target Start/End: Complemental strand, 19459832 - 19459740
Alignment:
| Q |
104 |
gagagaatgtgacaagtaggtgtggaaatacgacgtgctaggtggccatactgttaagataggttattcgatattacactagaacgtgtacag |
196 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||| ||||| ||||| |||||||||||| ||||||||||| ||||||| ||||||||||||| |
|
|
| T |
19459832 |
gagagtatgtgacaagtagatgtggaaatacgatatgctatgtggctatactgttaagacaggttattcgacattacaccagaacgtgtacag |
19459740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University