View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715_high_195 (Length: 235)
Name: NF1715_high_195
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_high_195 |
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Alignment Details
Target: chr6 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 21 - 203
Target Start/End: Complemental strand, 34957658 - 34957477
Alignment:
| Q |
21 |
cctgagctaccactgaggagtatactgagttgtatcataatgtattaaaaaacagcaaacacgaaagagagtcctcgtattcagcaagcatataccatta |
120 |
Q |
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| T |
34957658 |
cctgagctaccactgagaagtatactgagttgtatcataatgtattaaaag-cagcaaacacgaaagagagtcctagtattcagcaagcatatacaatta |
34957560 |
T |
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| Q |
121 |
taaatcctttaatatgataaagaaagtcttatacatatctttaattttaaagacggcataaattaaaaatgagatttaatgaa |
203 |
Q |
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| T |
34957559 |
taaatcctttaatatgataaagaaagtcttatacatatctttaagtttaaagactgcataaatcaacaatgagatttaatgaa |
34957477 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 173
Target Start/End: Complemental strand, 44213194 - 44213158
Alignment:
| Q |
137 |
ataaagaaagtcttatacatatctttaattttaaaga |
173 |
Q |
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| T |
44213194 |
ataaagaaagtcttatacatacctttaagtttaaaga |
44213158 |
T |
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