View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715_high_199 (Length: 234)
Name: NF1715_high_199
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_high_199 |
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Alignment Details
Target: chr1 (Bit Score: 173; Significance: 4e-93; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 44 - 220
Target Start/End: Complemental strand, 45927105 - 45926929
Alignment:
| Q |
44 |
ggcaaaaacaattgaaaaaacaactcacaaagataagcaactcttggattctcctcctcaatctcaatagcagctctaagaataggcacaatagatgaaa |
143 |
Q |
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| T |
45927105 |
ggcaaaaacaattgaaaaaacaactcacaaagataagcaactcttggattctcctcctcaatctcaatagcagctctaagaataggcagaatagatgaaa |
45927006 |
T |
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| Q |
144 |
gtgaagaaggagcaatctcactatccacaatattttcttcattttgcaactcatcaacggtccttgttggttccctt |
220 |
Q |
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| T |
45927005 |
gtgaagaaggagcaatctcactatccacaatattttcttcattttgcaactcatcaacggtccttgttggttccctt |
45926929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 45927245 - 45927203
Alignment:
| Q |
1 |
atattcaatccctaactccaataaaatttattcttcttaaaat |
43 |
Q |
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| T |
45927245 |
atattcaatccctaactccaataaaatttattcttcttaaaat |
45927203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 59 - 192
Target Start/End: Complemental strand, 15805622 - 15805489
Alignment:
| Q |
59 |
aaaaacaactcacaaagataagcaactcttggattctcctcctcaatctcaatagcagctctaagaataggcacaatagatgaaagtgaagaaggagcaa |
158 |
Q |
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||||| |||||||||||||||||||| |||||||||||| | |||||||||||||| ||||||||||| || |||| | | ||| ||||||||| ||| |
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| T |
15805622 |
aaaaagaactcacaaagataagcaacccttggattctccccttcaatctcaatagctgctctaagaattggaacaagaacagcaagagaagaaggaacaa |
15805523 |
T |
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| Q |
159 |
tctcactatccacaatattttcttcattttgcaa |
192 |
Q |
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| T |
15805522 |
tctcactatccataatattttcttcatttggcaa |
15805489 |
T |
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