View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1715_high_201 (Length: 231)

Name: NF1715_high_201
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1715_high_201
NF1715_high_201
[»] chr2 (17 HSPs)
chr2 (1-217)||(30135413-30135629)
chr2 (1-216)||(30021261-30021476)
chr2 (1-217)||(30039219-30039435)
chr2 (1-217)||(30079666-30079882)
chr2 (1-217)||(30108697-30108913)
chr2 (1-217)||(30233357-30233573)
chr2 (1-161)||(30120715-30120875)
chr2 (1-209)||(30277798-30278006)
chr2 (24-210)||(30250197-30250383)
chr2 (19-210)||(30186298-30186489)
chr2 (2-209)||(30788542-30788749)
chr2 (19-210)||(30169472-30169663)
chr2 (2-190)||(30066503-30066691)
chr2 (2-190)||(30010008-30010196)
chr2 (19-186)||(30222036-30222203)
chr2 (19-210)||(30090554-30090745)
chr2 (19-210)||(30127159-30127350)
[»] chr1 (1 HSPs)
chr1 (92-209)||(30271857-30271972)


Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 30135413 - 30135629
Alignment:
1 cttccaattagagacttgttttttcctcaaagcctttgccgttgtgactatcaaaaggggcaaaccagcacaacatttggcaacctttatcgcaattggt 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
30135413 cttccaattagagacttgttttttcctcaaagcctttgccgtagtgactatcaaaaggggcaaaccagcacaacatttggcaacctttatcgcaattggt 30135512  T
101 tttatattgaattcgtgaacaacatcacctgccatcttctcaaacaatttccagctatcctcctcaagtaaaacttcaagtctaaattctttttgagtgc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
30135513 tttatattgaattcgtgaacaacatcacctgccatcttctcaaacaatttccagctatcctcctcaagtaaaacttcaagtctaaattctttttgagtgc 30135612  T
201 ccatctcacaaatcaac 217  Q
    |||||||||||||||||    
30135613 ccatctcacaaatcaac 30135629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 30021476 - 30021261
Alignment:
1 cttccaattagagacttgttttttcctcaaagcctttgccgttgtgactatcaaaaggggcaaaccagcacaacatttggcaacctttatcgcaattggt 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
30021476 cttccaattagagacttgttttttcctcaaagcctttgccgtagtgactatcaaaaggggcaaaccagcacaacatttggcaacctttatcgcaattggt 30021377  T
101 tttatattgaattcgtgaacaacatcacctgccatcttctcaaacaatttccagctatcctcctcaagtaaaacttcaagtctaaattctttttgagtgc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
30021376 tttatattgaattcgtgaacaacatcacctgccatcttctcaaacaatttccagctatcctcctcaagtaaaacttcaagtctaaattctttttgagtgc 30021277  T
201 ccatctcacaaatcaa 216  Q
    ||||||||||||||||    
30021276 ccatctcacaaatcaa 30021261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 30039219 - 30039435
Alignment:
1 cttccaattagagacttgttttttcctcaaagcctttgccgttgtgactatcaaaaggggcaaaccagcacaacatttggcaacctttatcgcaattggt 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
30039219 cttccaattagagacttgttttttcctcaaagcctttgccgtagtgactatcaaaaggggcaaaccagcacaacatttggcaacctttatcgcaattggt 30039318  T
101 tttatattgaattcgtgaacaacatcacctgccatcttctcaaacaatttccagctatcctcctcaagtaaaacttcaagtctaaattctttttgagtgc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
30039319 tttatattgaattcgtgaacaacatcacctgccatcttctcaaacaatttccagctatcctcctcaagtaaaacttcaagtctaaattctttttgagtgc 30039418  T
201 ccatctcacaaatcaac 217  Q
     ||||||||||||||||    
30039419 gcatctcacaaatcaac 30039435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 30079882 - 30079666
Alignment:
1 cttccaattagagacttgttttttcctcaaagcctttgccgttgtgactatcaaaaggggcaaaccagcacaacatttggcaacctttatcgcaattggt 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
30079882 cttccaattagagacttgttttttcctcaaagcctttgccgtagtgactatcaaaaggggcaaaccagcacaacatttggcaacctttatcgcaattggt 30079783  T
101 tttatattgaattcgtgaacaacatcacctgccatcttctcaaacaatttccagctatcctcctcaagtaaaacttcaagtctaaattctttttgagtgc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
30079782 tttatattgaattcgtgaacaacatcacctgccatcttctcaaacaatttccagctatcctcctcaagtaaaacttcaagtctaaattctttttgagtgc 30079683  T
201 ccatctcacaaatcaac 217  Q
     ||||||||||||||||    
30079682 gcatctcacaaatcaac 30079666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 30108697 - 30108913
Alignment:
1 cttccaattagagacttgttttttcctcaaagcctttgccgttgtgactatcaaaaggggcaaaccagcacaacatttggcaacctttatcgcaattggt 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
30108697 cttccaattagagacttgttttttcctcaaagcctttgccgtagtgactatcaaaaggggcaaaccagcacaacatttggcaacctttatcgcaattggt 30108796  T
101 tttatattgaattcgtgaacaacatcacctgccatcttctcaaacaatttccagctatcctcctcaagtaaaacttcaagtctaaattctttttgagtgc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
30108797 tttatattgaattcgtgaacaacatcacctgccatcttctcaaacaatttccagctatcctcctcaagtaaaacttcaagtctaaattctttttgagtgc 30108896  T
201 ccatctcacaaatcaac 217  Q
     ||||||||||||||||    
30108897 gcatctcacaaatcaac 30108913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 30233357 - 30233573
Alignment:
1 cttccaattagagacttgttttttcctcaaagcctttgccgttgtgactatcaaaaggggcaaaccagcacaacatttggcaacctttatcgcaattggt 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
30233357 cttccaattagagacttgttttttcctcaaagcctttgccgtagtgactatcaaaaggggcaaaccagcacaacatttggcaacctttatcgcaattggt 30233456  T
101 tttatattgaattcgtgaacaacatcacctgccatcttctcaaacaatttccagctatcctcctcaagtaaaacttcaagtctaaattctttttgagtgc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
30233457 tttatattgaattcgtgaacaacatcacctgccatcttctcaaacaatttccagctatcctcctcaagtaaaacttcaagtctaaattctttttgagtgc 30233556  T
201 ccatctcacaaatcaac 217  Q
     ||||||||||||||||    
30233557 gcatctcacaaatcaac 30233573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 30120715 - 30120875
Alignment:
1 cttccaattagagacttgttttttcctcaaagcctttgccgttgtgactatcaaaaggggcaaaccagcacaacatttggcaacctttatcgcaattggt 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
30120715 cttccaattagagacttgttttttcctcaaagcctttgccgtagtgactatcaaaaggggcaaaccagcacaacatttggcaacctttatcgcaattggt 30120814  T
101 tttatattgaattcgtgaacaacatcacctgccatcttctcaaacaatttccagctatcct 161  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
30120815 tttatattgaattcgtgaacaacatcacctgccatcttctcaaacaatttccagctatcct 30120875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 30278006 - 30277798
Alignment:
1 cttccaattagagacttgttttttcctcaaagcctttgccgttgtgactatcaaaaggggcaaaccagcacaacatttggcaacctttatcgcaattggt 100  Q
    |||||||  |||||| ||||||||||||||||||||||||  ||| |||||||||||||||||||||| |||||||||||| || |||   ||||||||     
30278006 cttccaagcagagacatgttttttcctcaaagcctttgccactgtaactatcaaaaggggcaaaccagaacaacatttggccactttttctgcaattggc 30277907  T
101 tttatattgaattcgtgaacaacatcacctgccatcttctcaaacaatttccagctatcctcctcaagtaaaacttcaagtctaaattctttttgagtgc 200  Q
    |||||||||||||| |||||||||||||||||||| |||||||| |||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||    
30277906 tttatattgaattcttgaacaacatcacctgccattttctcaaataatttccaactatcatcctcaaataaaacttcaagtctaaattctttttgagtgc 30277807  T
201 ccatctcac 209  Q
    | |||||||    
30277806 caatctcac 30277798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 24 - 210
Target Start/End: Complemental strand, 30250383 - 30250197
Alignment:
24 tcctcaaagcctttgccgttgtgactatcaaaaggggcaaaccagcacaacatttggcaacctttatcgcaattggttttatattgaattcgtgaacaac 123  Q
    ||||||||||||||||   ||| |||||||||||||| ||||||||||||||||| || || ||||  ||||| || |||||||||||||| ||||||||    
30250383 tcctcaaagcctttgctactgtaactatcaaaaggggtaaaccagcacaacattttgccacttttactgcaatgggctttatattgaattcttgaacaac 30250284  T
124 atcacctgccatcttctcaaacaatttccagctatcctcctcaagtaaaacttcaagtctaaattctttttgagtgcccatctcaca 210  Q
    |||||||| ||| ||| ||||||||||||| ||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||    
30250283 atcacctgtcattttcacaaacaatttccaactatcgtcctcatgtaaaacttcaagtctaaattctttctgagtgcccatctcaca 30250197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 19 - 210
Target Start/End: Original strand, 30186298 - 30186489
Alignment:
19 ttttttcctcaaagcctttgccgttgtgactatcaaaaggggcaaaccagcacaacatttggcaacctttatcgcaattggttttatattgaattcgtga 118  Q
    |||||||||||||||||| ||    || || ||||||||||||||||| ||||||| |||||| ||||  |  |||||||| |||||||||||||| |||    
30186298 ttttttcctcaaagccttagcaacagtaacaatcaaaaggggcaaacctgcacaacgtttggccacctccactgcaattggctttatattgaattcttga 30186397  T
119 acaacatcacctgccatcttctcaaacaatttccagctatcctcctcaagtaaaacttcaagtctaaattctttttgagtgcccatctcaca 210  Q
    ||||||||||||||||| ||||||||||||||||| |||||||||||| | ||| |||||||||| |||||||| |||||||||||||||||    
30186398 acaacatcacctgccattttctcaaacaatttccaactatcctcctcatgcaaagcttcaagtctgaattctttctgagtgcccatctcaca 30186489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 2 - 209
Target Start/End: Complemental strand, 30788749 - 30788542
Alignment:
2 ttccaattagagacttgttttttcctcaaagcctttgccgttgtgactatcaaaaggggcaaaccagcacaacatttggcaacctttatcgcaattggtt 101  Q
    ||||||| | ||| || ||||||||||||||| ||||||  ||  || |||| |||||||||||||||||||||  |||| || | ||  ||||||||||    
30788749 ttccaatcatagaatttttttttcctcaaagcttttgccactgcaacaatcagaaggggcaaaccagcacaacaaatggccacttctactgcaattggtt 30788650  T
102 ttatattgaattcgtgaacaacatcacctgccatcttctcaaacaatttccagctatcctcctcaagtaaaacttcaagtctaaattctttttgagtgcc 201  Q
    | ||||| || || |||||||||||||||||||| |||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||    
30788649 taatattaaaatcttgaacaacatcacctgccattttctcaaataatttccaactatcttcctcaagtaaaacttcaagtctaaattctttttgagtgcc 30788550  T
202 catctcac 209  Q
     |||||||    
30788549 aatctcac 30788542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 19 - 210
Target Start/End: Complemental strand, 30169663 - 30169472
Alignment:
19 ttttttcctcaaagcctttgccgttgtgactatcaaaaggggcaaaccagcacaacatttggcaacctttatcgcaattggttttatattgaattcgtga 118  Q
    |||||| ||||||||||| |||  ||| ||||||||||||||||| |||||||||||  | || || | ||  |||||||| |||||||| ||||| |||    
30169663 tttttttctcaaagccttcgccactgtaactatcaaaaggggcaacccagcacaacaccttgccacttctactgcaattggctttatatttaattcatga 30169564  T
119 acaacatcacctgccatcttctcaaacaatttccagctatcctcctcaagtaaaacttcaagtctaaattctttttgagtgcccatctcaca 210  Q
    |||| |||||||||||| ||||||||||||||||| |||||||| |   ||||||||||||||||||||||||||||| |||||||||||||    
30169563 acaatatcacctgccattttctcaaacaatttccaactatcctcttgttgtaaaacttcaagtctaaattctttttgaatgcccatctcaca 30169472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 2 - 190
Target Start/End: Complemental strand, 30066691 - 30066503
Alignment:
2 ttccaattagagacttgttttttcctcaaagcctttgccgttgtgactatcaaaaggggcaaaccagcacaacatttggcaacctttatcgcaattggtt 101  Q
    ||||||| | ||| || ||| ||||||||||||||||||   || || |||||||| || ||||||||||||| | |||| || | ||  ||||||||||    
30066691 ttccaatcaaagatttttttcttcctcaaagcctttgccacagtaacaatcaaaagcggaaaaccagcacaacgtctggccacttctactgcaattggtt 30066592  T
102 ttatattgaattcgtgaacaacatcacctgccatcttctcaaacaatttccagctatcctcctcaagtaaaacttcaagtctaaattct 190  Q
    |||||||||| || |||||||||||||||||||| |||| |||||||| ||| ||||||||||||  ||||||||||||||||||||||    
30066591 ttatattgaaatcttgaacaacatcacctgccattttcttaaacaattgccaactatcctcctcatttaaaacttcaagtctaaattct 30066503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 2 - 190
Target Start/End: Complemental strand, 30010196 - 30010008
Alignment:
2 ttccaattagagacttgttttttcctcaaagcctttgccgttgtgactatcaaaaggggcaaaccagcacaacatttggcaacctttatcgcaattggtt 101  Q
    ||||||| | ||| || ||| ||||| ||||||||||||   || || |||||||| || || |||||||||| | |||| || ||||   |||||||||    
30010196 ttccaatcaaagatttttttcttcctaaaagcctttgccacagtaacaatcaaaagcggaaatccagcacaacgtctggccacttttactacaattggtt 30010097  T
102 ttatattgaattcgtgaacaacatcacctgccatcttctcaaacaatttccagctatcctcctcaagtaaaacttcaagtctaaattct 190  Q
    |||||||||| || |||||||||||||||||||| |||| |||||||| ||| ||||||||||||  ||||||||||||||||||||||    
30010096 ttatattgaaatcttgaacaacatcacctgccattttcttaaacaattgccaactatcctcctcatttaaaacttcaagtctaaattct 30010008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 19 - 186
Target Start/End: Complemental strand, 30222203 - 30222036
Alignment:
19 ttttttcctcaaagcctttgccgttgtgactatcaaaaggggcaaaccagcacaacatttggcaacctttatcgcaattggttttatattgaattcgtga 118  Q
    |||||| ||||||||||| |||   || ||||||||||| || || || ||||||||| |||| || | || ||||||||| |||||||| ||||| |||    
30222203 tttttttctcaaagccttcgccacagtaactatcaaaagaggtaacccggcacaacatctggccacttctaccgcaattggctttatattaaattcatga 30222104  T
119 acaacatcacctgccatcttctcaaacaatttccagctatcctcctcaagtaaaacttcaagtctaaa 186  Q
    |||| |||||||||||| ||||||||||||||||| |||||||||| | | ||||| |||||||||||    
30222103 acaatatcacctgccattttctcaaacaatttccaactatcctcctgatgcaaaacatcaagtctaaa 30222036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 19 - 210
Target Start/End: Complemental strand, 30090745 - 30090554
Alignment:
19 ttttttcctcaaagcctttgccgttgtgactatcaaaaggggcaaaccagcacaacatttggcaacctttatcgcaattggttttatattgaattcgtga 118  Q
    |||||| ||||||||||| |||   || ||||||||||| || ||  | ||||||||| |||| || | || ||||||||| |||||||| ||||| |||    
30090745 tttttttctcaaagccttcgccacagtaactatcaaaagaggtaactcggcacaacatctggccacttctaccgcaattggctttatattaaattcatga 30090646  T
119 acaacatcacctgccatcttctcaaacaatttccagctatcctcctcaagtaaaacttcaagtctaaattctttttgagtgcccatctcaca 210  Q
    |||| |||||||||||| ||||||||||||||||| |||||||||| | | ||||| |||| ||||||| |||| ||| ||  |||||||||    
30090645 acaatatcacctgccattttctcaaacaatttccaactatcctcctgatgcaaaacatcaattctaaatgctttctgaatgttcatctcaca 30090554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 19 - 210
Target Start/End: Complemental strand, 30127350 - 30127159
Alignment:
19 ttttttcctcaaagcctttgccgttgtgactatcaaaaggggcaaaccagcacaacatttggcaacctttatcgcaattggttttatattgaattcgtga 118  Q
    |||||| ||||||||||| |||   || ||||||||||| || ||  | ||||||||| |||| || | || ||||||||| |||||||| ||||| |||    
30127350 tttttttctcaaagccttcgccacagtaactatcaaaagaggtaactcggcacaacatctggccacttctaccgcaattggctttatattaaattcatga 30127251  T
119 acaacatcacctgccatcttctcaaacaatttccagctatcctcctcaagtaaaacttcaagtctaaattctttttgagtgcccatctcaca 210  Q
    |||| |||||||||||| ||||||||||||||||| |||||||||| | | ||||| |||| ||||||| |||| ||| ||  |||||||||    
30127250 acaatatcacctgccattttctcaaacaatttccaactatcctcctgatgcaaaacatcaattctaaatgctttctgaatgttcatctcaca 30127159  T

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Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 92 - 209
Target Start/End: Complemental strand, 30271972 - 30271857
Alignment:
92 gcaattggttttatattgaattcgtgaacaacatcacctgccatcttctcaaacaatttccagctatcctcctcaagtaaaacttcaagtctaaattctt 191  Q
    |||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||| ||||| | |||| |||||| ||||||||  |||||||    
30271972 gcaattggttttatattgaaatcttgaacaacatcacctgccattttctcaaacaatttccaactatcttgctcatgtaaaatttcaagtc--aattctt 30271875  T
192 tttgagtgcccatctcac 209  Q
    ||||||||||||||||||    
30271874 tttgagtgcccatctcac 30271857  T

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