View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715_high_202 (Length: 230)
Name: NF1715_high_202
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_high_202 |
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Alignment Details
Target: chr4 (Bit Score: 95; Significance: 1e-46; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 17 - 134
Target Start/End: Complemental strand, 3952525 - 3952410
Alignment:
| Q |
17 |
catttctttcttcttaactcctgcaatagaccacaagtttaactggtgctttgaaactctctgaagaaacagcaaatgcagaaaacaaagttaaaaagaa |
116 |
Q |
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| T |
3952525 |
catttctttcatcttaactcctgcattagaccacaagtttaactggtgctttgaaactct--gaagaaacaggaaatgcagaaaacaaagttaaaaagaa |
3952428 |
T |
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| Q |
117 |
aaccaatgaagtagatgc |
134 |
Q |
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| T |
3952427 |
aaccaatgaagtagatgc |
3952410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 4012362 - 4012433
Alignment:
| Q |
17 |
catttctttcttcttaactcctgcaatagaccacaagtttaactggtgctttgaaactctctgaagaaacag |
88 |
Q |
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| T |
4012362 |
catttctttcttcttaactccttcaattgcccacaattttaactggtgctttgaaactctctgaagaaacag |
4012433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 93
Target Start/End: Original strand, 4003698 - 4003774
Alignment:
| Q |
17 |
catttctttcttcttaactcctgcaatagaccacaagtttaactggtgctttgaaactctctgaagaaacagcaaat |
93 |
Q |
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| T |
4003698 |
catttctttcttcttaactcctggaatagcccacaagtttaattgatgctttaaaattctctgaagaaacaggaaat |
4003774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 3989869 - 3989937
Alignment:
| Q |
19 |
tttctttcttcttaactcctgcaatagaccacaagtttaactggtgctttgaaactctctgaagaaaca |
87 |
Q |
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| T |
3989869 |
tttctttcttcttaactcctgcaatagtccatgtgcttaactggtgctttgaaattctctgatgaaaca |
3989937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 13399733 - 13399794
Alignment:
| Q |
17 |
catttctttcttcttaactcctgcaatagaccacaagtttaactggtgctttgaaactctct |
78 |
Q |
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||||||||||||||||||||| ||||||| | |||||||||| ||||||||||| ||||| |
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| T |
13399733 |
catttctttcttcttaactccggcaatagccagcaagtttaacctgtgctttgaaattctct |
13399794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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