View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715_high_204 (Length: 230)
Name: NF1715_high_204
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_high_204 |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 4364680 - 4364465
Alignment:
| Q |
1 |
cctctgccaccatgggtactagaagaaatcaggaagaaccctgagttggtttacacagacaaattaggaagaagaaatccagaatacatctcattgggat |
100 |
Q |
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||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4364680 |
cctctaccaccatgggtgctagaagaaatcaggaagaaccctgagttggtttacacagacaaattaggaagaagaaatccagaatacatctcattgggat |
4364581 |
T |
|
| Q |
101 |
gtgattcagtgcctgttctagcaggaagaactccacttcaagtctactccgattatatgagaagctttcgtgacagatttacagattatttgggtaatgt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || || |||||||||||||| ||||| |
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| T |
4364580 |
gtgattcagtgcctgttctagcaggaagaactccacttcaagtctactccgattatatgagaagcttccgtgataggttcacagattatttgggcaatgt |
4364481 |
T |
|
| Q |
201 |
tatcatagtaagtact |
216 |
Q |
| |
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|||||||||||||||| |
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|
| T |
4364480 |
tatcatagtaagtact |
4364465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 4372272 - 4372060
Alignment:
| Q |
1 |
cctctgccaccatgggtactagaagaaatcaggaagaaccctgagttggtttacacagacaaattaggaagaagaaatccagaatacatctcattgggat |
100 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4372272 |
cctctaccaccatgggtgctagaagaaatcaggaagaaccctgagttggtttacacagacaaattaggaagaagaaatccagaatacatctcattgggat |
4372173 |
T |
|
| Q |
101 |
gtgattcagtgcctgttctagcaggaagaactccacttcaagtctactccgattatatgagaagctttcgtgacagatttacagattatttgggtaatgt |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || || |||||||||||||| ||||| |
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| T |
4372172 |
gtgattcagtgcctgttctagcaggaagaactccacttcaagtctactccgattatatgagaagcttccgtgataggttcacagattatttgggcaatgt |
4372073 |
T |
|
| Q |
201 |
tatcatagtaagt |
213 |
Q |
| |
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||||||||||||| |
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| T |
4372072 |
tatcatagtaagt |
4372060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 41042874 - 41043052
Alignment:
| Q |
1 |
cctctgccaccatgggtactagaagaaatcaggaagaaccctgagttggtttacacagacaaattaggaagaagaaatccagaatacatctcattgggat |
100 |
Q |
| |
|
||||| || |||||||| | ||||| ||||| ||||||||||| | ||||||||||||| || ||| || |||||||| || ||||| |||||||||| |
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| T |
41042874 |
cctctacctccatgggtgatggaagagatcagcaagaaccctgacattgtttacacagacagatcagggaggagaaatcctgagtacatatcattgggat |
41042973 |
T |
|
| Q |
101 |
gtgattcagtgcctgttctagcaggaagaactccacttcaagtctactccgattatatgagaagctttcgtgacagatt |
179 |
Q |
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|
|||||||||||||||||||| |||||||||||| || ||||| || | || || ||||| ||||||||||||||||| |
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|
| T |
41042974 |
gtgattcagtgcctgttctaaaaggaagaactcccctccaagtgtatgctgactacatgaggagctttcgtgacagatt |
41043052 |
T |
|
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