View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1715_high_213 (Length: 224)
Name: NF1715_high_213
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_high_213 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 181; Significance: 6e-98; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 11 - 210
Target Start/End: Complemental strand, 1794837 - 1794637
Alignment:
| Q |
11 |
catcatcaattgaagggagtgtcaatagcagtattggcagtgttgtttctaagaaacattaagggg-tctaaaaagaactatattcatcaatgacgctcc |
109 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
1794837 |
catcatcatctgaagggagtgtcaatagcagtattggcagtgttgtttctaagaaacattaagggggtctaaaaagaactatattcatcaatgacgctcc |
1794738 |
T |
|
| Q |
110 |
tttgtattcacctaacatgtggatgcaaattttcggatttcaatttggtgaatacgagaattatcataataatgttttagagttgagtgaatgggaaaaa |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1794737 |
tttgtattcacctaacatgtggatgcaaattttcggatttcaatttggtgaatatgagaattatcataataatgttttagagttgagtgaatgggaaaaa |
1794638 |
T |
|
| Q |
210 |
t |
210 |
Q |
| |
|
| |
|
|
| T |
1794637 |
t |
1794637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 96 - 206
Target Start/End: Complemental strand, 1814757 - 1814647
Alignment:
| Q |
96 |
atcaatgacgctcctttgtattcacctaacatgtggatgcaaattttcggatttcaatttggtgaatacgagaattatcataataatgttttagagttga |
195 |
Q |
| |
|
|||||||| ||||||||| |||||||||| |||||||||||||| || ||||||||||||| |||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
1814757 |
atcaatgaggctcctttggattcacctaaaatgtggatgcaaatgtttggatttcaatttgatgaatataggaattatgataataatgttttagagttga |
1814658 |
T |
|
| Q |
196 |
gtgaatgggaa |
206 |
Q |
| |
|
||||||||||| |
|
|
| T |
1814657 |
gtgaatgggaa |
1814647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 11 - 206
Target Start/End: Complemental strand, 1811692 - 1811501
Alignment:
| Q |
11 |
catcatcaattgaagggagtgtcaatagcagtattggcagtgttgtttctaagaaacattaaggggtct-aaaaagaactatattcatcaatgacgctcc |
109 |
Q |
| |
|
|||||||| |||||||||| |||||||||||| |||| ||||||||| ||| | ||| | | ||| || |||||||| || ||||| ||| ||||| |
|
|
| T |
1811692 |
catcatcatctgaagggagtatcaatagcagtaatggcggtgttgttt-taaaagacaatgatggggcttaaaaagaa--atgttcat---tgaggctcc |
1811599 |
T |
|
| Q |
110 |
tttgtattcacctaacatgtggatgcaaattttcggatttcaatttggtgaatacgagaattatcataataatg-ttttagagttgagtgaatgggaa |
206 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| ||||||||||||| |||||| | || |||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
1811598 |
tttggattcacctaacatgtggatgcaaatttttggatttcaatttgatgaatatgggagttatcaaaataatgtttttagagttgagtgaatgggaa |
1811501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University