View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715_high_217 (Length: 220)
Name: NF1715_high_217
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715_high_217 |
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Alignment Details
Target: chr7 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 20 - 204
Target Start/End: Original strand, 9269332 - 9269516
Alignment:
| Q |
20 |
ctccacacaagaaatcaaacaaagagagagacacatcatttcatcttctttccctgttcaatctgatacgcacaaattacttcttaattcaccctaattc |
119 |
Q |
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||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |
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| T |
9269332 |
ctccacacaagaaatcaaacaaagagagaaacacatgatttcatcttctttccctgttcaatctgatacgcacaacttacttctaaattcaccctaattc |
9269431 |
T |
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| Q |
120 |
ttcgattctacggtctccatgattacatcaattgttttaaattagatttttccattggaagaaggtagtgaatcaaggaggattt |
204 |
Q |
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| T |
9269432 |
ttcgattctatgctctccttgattacatcaattgttttaaattagatttttccattggaagaaggtagtgaatcaaggaggattt |
9269516 |
T |
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Target: chr8 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 20 - 206
Target Start/End: Complemental strand, 10854689 - 10854503
Alignment:
| Q |
20 |
ctccacacaagaaatcaaacaaagagagagacacatcatttcatcttctttccctgttcaatctgatac-gcacaaattacttcttaattcaccctaatt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||| |||||||| |||||||||||||| |
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| T |
10854689 |
ctccacacaagaaatcaaacaaagagagagacacatgatttcatcttctttccttgttcaatctgatactgcacaacttacttctaaattcaccctaatt |
10854590 |
T |
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| Q |
119 |
cttcgattctacggtctccatgattacatcaattgttttaaattagatttttccattggaagaaggtagtgaatcaaggaggattttg |
206 |
Q |
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||| |||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10854589 |
ctttgattctaccctctccttgattacatcaattg-tttaaattagatttttccattggaagaaggtagtgaatcaaggaggattttg |
10854503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 206
Target Start/End: Original strand, 24120916 - 24120956
Alignment:
| Q |
166 |
tttttccattggaagaaggtagtgaatcaaggaggattttg |
206 |
Q |
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||||| |||| |||||||||||||| ||||||||||||||| |
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| T |
24120916 |
ttttttcattagaagaaggtagtgagtcaaggaggattttg |
24120956 |
T |
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